PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02704.1.p
Common NameEUGRSUZ_F027042
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 856aa    MW: 94076.4 Da    PI: 6.5494
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02704.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84.2e-18249348198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Eucgr.F02704.1.p 249 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PE 339
                       99**************************555567778***************9989999999***9.********************876.66 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++l +++++
  Eucgr.F02704.1.p 340 AKLIMGFRK 348
                       667776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-29241352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-19246350IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-22247348No hitNo description
PfamPF023629.0E-16249348IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912249350IPR003340B3 DNA binding domain
SMARTSM010191.0E-19249350IPR003340B3 DNA binding domain
PROSITE profilePS5105013.497521571IPR011124Zinc finger, CW-type
PfamPF074969.6E-12526566IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MLLELLDCGG INCATCAKSS GLLPIASDER PSEFGMINVR TGELQSSTTD NHFDSDEVDK  60
LKLIRLRSST DDSGLGQSLL TQYNDTNRSH EPTNREGVIN TPSALEMGGS CYLLSSKASN  120
GATHASQPDI LKANIAAKEF DDPHARTDLS MTIGVPLGKS YPSLRDHSTT PSLSPQGPKS  180
RHVLHKPPKP AFASGFESNA SVVSQIRVAR PPAEGRGRNQ LLPRYWPRIT DQELQQISGD  240
SNSTIVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPLRIQD VKGKEWVFQF  300
RFWPNNNSRM YVLEGVTPCI QSMQLQAGDT VTFSRMDPEA KLIMGFRKAS TSMMQDSQLA  360
AVSNGNHSSE ALISGGFENV PMISGYSSLL HSFKGSTDPQ LNALSKHWSS ASGDISWQGT  420
EKHGLPRDAF LLPGMSAPER KRARNIGSKS KRLLIDSQDA LELKMTWEEL QDLLRPPSVN  480
PSIVTVEDHE FEEYDEPPVF GKSSIFILRS TGSSKMKREE RRGQEQWVQC DSCGKWRRLP  540
VDVLLPPRWT CAENAWDQSR RLCSAPDGLT PRDLENLLRL TKEFKKRKLA TTVRPALEHE  600
SSGLDALANA AIVGDDGDPG TTSVAATTKH PRHRPGCSCI VCIQPPSGKG KHKPTCNCNV  660
CMTVKRRFKT LMMRKKKRQS EREAEIAQRK QLWGSKDEIE VDSTSAHRSS HHNPSENESR  720
IGNELESQSQ TTNSANTFAE TGKGQINLNC QLDLNCQPDR NEDLKLGSSQ TSMMNLLRVA  780
SQPLETYLKQ NGLASLVSEQ QASPAGHVQL QGATTDNEGQ PSEDHCADSE IQEMALEKDD  840
TDEKDSTPDQ GEGDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-682273522127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1664675KRRFKTLMMRKK
2664677KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02704.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064806.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
TrEMBLA0A059BSD70.0A0A059BSD7_EUCGR; Uncharacterized protein
STRINGXP_010064806.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72032639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1