PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02492.1.p
Common NameEUGRSUZ_F02492, LOC104449427
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 312aa    MW: 33085.3 Da    PI: 6.5939
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02492.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.72.1e-294105197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C +dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P++G+vg+++++++ql+
  Eucgr.F02492.1.p   4 SCNGCRVLRKGCGDDCSIRPCLqwiksPDSQAHATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRILNPIHGSVGLLWDGSWQLC 96 
                       6******************************************************************************************** PP

            DUF260  89 qlkaelall 97 
                       +++ e++l 
  Eucgr.F02492.1.p  97 HAAMEAVLS 105
                       ***998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.8233109IPR004883Lateral organ boundaries, LOB
PfamPF031951.4E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGDDCS IRPCLQWIKS PDSQAHATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRILNP IHGSVGLLWD GSWQLCHAAM EAVLSGVPIT PIASAASEAA  120
APPLKAYDIR HIPRQENPAA AAAMMAAAGE ANRARPIRSG RFKRPGARTK AQRHPAPPPP  180
AVEWCDEESN RSPSHDSSLS HQSVLGAANA GVGFGGGDSK ETESNSMVSA ETTTTTVAEP  240
PQPLQPEPEP ESAAAAGAAE REDGASAEPE SEVGLELTLG FKPASREDHV IPVKKRRFEQ  300
RDEACSMELG L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02492.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4240182e-78JX424018.1 Melaleuca argentea microsatellite KPMA16 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061881.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8865e-91LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A059BS580.0A0A059BS58_EUCGR; Uncharacterized protein
STRINGXP_010061881.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-66LOB domain-containing protein 41