PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02440.1.p
Common NameEUGRSUZ_F02440, LOC104449381
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 336aa    MW: 35507.6 Da    PI: 5.626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.4e-20141190255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Eucgr.F02440.1.p 141 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 190
                       59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.34E-33140200No hitNo description
SuperFamilySSF541711.5E-23141199IPR016177DNA-binding domain
PROSITE profilePS5103223.117141198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-32141199IPR001471AP2/ERF domain
SMARTSM003805.6E-37141204IPR001471AP2/ERF domain
PRINTSPR003673.1E-11142153IPR001471AP2/ERF domain
PfamPF008472.2E-14142190IPR001471AP2/ERF domain
PRINTSPR003673.1E-11164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MATTMEFYSS RSALPSYRIS NGGDELMEAL CPFIGGYGAS TSTPSLSSPS SSSSSLFSFE  60
PVSFSDGCST SPDPLGFELP GPIGLNHLTP SQINQIQAQI QFQSTNLPSY HGHGYHPSML  120
LGPKPVSMKI SGSAGKPATK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA  180
YDRAAYKLRG DFARLNFPHL KHCAASDVGD GRVSPLHSSV DAKLEAICQT IAEKKADGAK  240
KPPASGRSRA AAAAAAAAAA AAAAAREVSS PEEASEVTEV TEVKGSEPES EGSAGSSPLS  300
DLTFDDFAEA SWECVSLPEA STLMKYPSEI DWDAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20140198160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9929440.0HM992944.1 Eucalyptus globulus DREB2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061815.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E45e-75RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A059BT630.0A0A059BT63_EUCGR; Uncharacterized protein
STRINGXP_010061815.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-45ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]