PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02399.4.p
Common NameEUGRSUZ_F02399
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 507aa    MW: 57338.4 Da    PI: 9.7051
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02399.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-1721108499
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       +   s++ +s+rl +p kf+++++g    s    le +sg++W v+l       + +l +GW +F +++ + +gD +vF++dg+  f  +v+v
  Eucgr.F02399.4.p  21 IY--SSSVSSRRLKIPDKFVKHMEGW--MSGLALLEGPSGNTWHVEL--IEENHELFLNSGWHSFIRDHSIVSGDLLVFRHDGNLHF--YVQV 105
                       44..77777889********777666..4448999************..6666779************************9886666..9999 PP

                       E-S CS
                B3  97 frk 99 
                       f++
  Eucgr.F02399.4.p 106 FEQ 108
                       986 PP
2B349.76.6e-162543371197
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       + s  l +p +f  eh     +++t++l++++g+sW+v+    ++   ++++ +GW  Fv+ang++  D++vF+l+++ e  ++v+++
  Eucgr.F02399.4.p 254 SGSYTLNIPYQFSMEHLP--VSKITIVLRNLKGESWTVNSVPtTRVHTSHTFCGGWMAFVRANGIELEDVCVFELVRKCE--MRVHIL 337
                       4556799*****999963..4779***************954566666799999********************998443..577765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.65E-2312111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-2313110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.33916109IPR003340B3 DNA binding domain
CDDcd100177.08E-1716106No hitNo description
SMARTSM010192.1E-1318109IPR003340B3 DNA binding domain
PfamPF023623.1E-1520108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-23236339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-24237338IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-19242337No hitNo description
PROSITE profilePS5086312.929244340IPR003340B3 DNA binding domain
SMARTSM010191.6E-13244340IPR003340B3 DNA binding domain
PfamPF023621.7E-12247337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MERDETRWKM PNGKRPHFFE IYSSSVSSRR LKIPDKFVKH MEGWMSGLAL LEGPSGNTWH  60
VELIEENHEL FLNSGWHSFI RDHSIVSGDL LVFRHDGNLH FYVQVFEQSS CEKEAAFHAM  120
CSQDPSSCRQ NGERNGERNE ITYCSNIVYE SHKPKVCACD DKLGRKQDAV TSAQHRGTSI  180
VRETPHDNII LSSKAQVYEE SPDIRNRFSK GDHSSLSTSC HMLKSLSEEE RKVARSFSSH  240
FPYFVRIMKK FNISGSYTLN IPYQFSMEHL PVSKITIVLR NLKGESWTVN SVPTTRVHTS  300
HTFCGGWMAF VRANGIELED VCVFELVRKC EMRVHILGAA QGRPDCQSVK KTLTWLDVRN  360
TATLNAGREN VSKKRKRKST KVSSQIVEKV KRMLQEASSS DMKKHAGAFK GSSNALKTSN  420
GKSAIIVGAS TGTARSSQNT DCLSVMLSLQ EERVARSFAS SFPKFVRIMK RFNVSGSYTL  480
VSIYFGCILS CCTQPHAKKL WYFIVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372377KKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02399.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061801.10.0PREDICTED: B3 domain-containing protein Os11g0197600
TrEMBLA0A059BR820.0A0A059BR82_EUCGR; Uncharacterized protein
STRINGXP_010061800.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-23B3 family protein