PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F02358.1.p | ||||||||
Common Name | EUGRSUZ_F02358, LOC104449338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 230aa MW: 25828.7 Da PI: 10.1494 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.3 | 7.6e-15 | 131 | 219 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +k ++ps+v+ +l l+ +f+++ ++k+ + +tl de+g+++ + rk++ l++GWk+F a++L +gD vvF+l++ ++++v Eucgr.F02358.1.p 131 VKSMLPSHVSGGFWLGLSVQFCKSS-LPKNDG-VITLVDEDGEEFPTIYLARKTG----LSGGWKGFSVAHELTDGDAVVFQLIK--PTTMKV 215 6899******************766.555444.8***************656665....***********************987..677799 PP EEE- CS B3 95 kvfr 98 ++r Eucgr.F02358.1.p 216 YIIR 219 8887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-18 | 122 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-22 | 123 | 222 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.74E-24 | 128 | 219 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 130 | 221 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-21 | 130 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.7E-13 | 131 | 220 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVAAKPKESY EECRRKRLEE NKKRMEALNL PQLSQSLRSS SSSPNSTPMK QSKPRTVEKR 60 VVVVRRSSRV ANMPAPVYRE VVIDRVAVPR RIFKRRDPLN LVYASAEARE YALEKAEQLQ 120 STLEPQYPTL VKSMLPSHVS GGFWLGLSVQ FCKSSLPKND GVITLVDEDG EEFPTIYLAR 180 KTGLSGGWKG FSVAHELTDG DAVVFQLIKP TTMKVYIIRV NGFDKSEEP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F02358.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010061766.1 | 1e-169 | PREDICTED: B3 domain-containing protein At5g42700 isoform X2 | ||||
Swissprot | Q9FMZ4 | 9e-74 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A059BSX9 | 1e-167 | A0A059BSX9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061764.1 | 1e-147 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 4e-65 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F02358.1.p |
Entrez Gene | 104449338 |
Publications ? help Back to Top | |||
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