PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F02319.1.p
Common NameEUGRSUZ_F02319, LOC104449310
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 148aa    MW: 16794.9 Da    PI: 9.6889
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F02319.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-172372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+G+r +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Eucgr.F02319.1.p 23 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATAVAAARAYDTAVFYLRG 72
                      69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2072380IPR001471AP2/ERF domain
SMARTSM003801.1E-362386IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-212381IPR016177DNA-binding domain
PRINTSPR003676.4E-122435IPR001471AP2/ERF domain
CDDcd000182.15E-202482No hitNo description
Gene3DG3DSA:3.30.730.109.0E-312481IPR001471AP2/ERF domain
PfamPF008476.2E-112472IPR001471AP2/ERF domain
PRINTSPR003676.4E-126282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MESERYDETT EKQRIRRRPH QKPYRGIRMR KWGKWVAEIR EPNKRSRIWL GSYATAVAAA  60
RAYDTAVFYL RGPSARLNFP DLILHEGQDS LGEVSAASIR RRAAEVGAQV DAVQAAAPAK  120
SRPCRTPDLN EYPQLEDLGE IDHESVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-162280463ATERF1
3gcc_A9e-162280463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F02319.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3619371e-46AK361937.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061729.11e-105PREDICTED: ethylene-responsive transcription factor RAP2-1
SwissprotQ8LC305e-49RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A059BRY01e-104A0A059BRY0_EUCGR; Uncharacterized protein
STRINGXP_010061729.11e-104(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.16e-31related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]