PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.F02223.1.p | ||||||||
Common Name | EUGRSUZ_F02223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 663aa MW: 72714.7 Da PI: 7.376 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.8 | 8.3e-16 | 325 | 384 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Eucgr.F02223.1.p 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 384 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.6 | 1.7e-14 | 429 | 478 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Eucgr.F02223.1.p 429 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 478 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.30E-22 | 325 | 392 | No hit | No description |
SuperFamily | SSF54171 | 6.15E-17 | 325 | 394 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.1E-12 | 325 | 384 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-29 | 326 | 398 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.269 | 326 | 392 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.5E-16 | 326 | 393 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 327 | 338 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.13E-25 | 427 | 488 | No hit | No description |
SuperFamily | SSF54171 | 1.5E-17 | 427 | 488 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.177 | 428 | 486 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 428 | 492 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-18 | 428 | 486 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.9E-9 | 429 | 478 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-6 | 468 | 488 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 663 aa Download sequence Send to blast |
MEMKSVSENG GGASGGNWLG FSLSPHHLKM EVAPQAEHHQ NHHHHHHQYH HQPQQGEPGS 60 YFLSAPPPPP HYSSSGLCYG GGVGDNNNGG YLHSPLSVMP LKSDGSLCIM EALTRSRPQG 120 LGQGSTPKLE DFLGGASATV TATTMPLSLD SLYSYQQSAD PEKQSLDLLH EPFRHQQQHQ 180 IYYPNELTCP ALYHSPLAEE EQKETHIASC DENGGFSCLK SWVTRNFSSS SCHVGLDQMS 240 SGMVCHNGGN SSEAVGPMEC GDLQNLSLSM SPSSTSSCVT VPTRQISPTE NECVGMEMTK 300 KRSSNCHNKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV 360 YLGGYDKEEK AARAYDLAAL KYWGPSTHIN FPLENYQKEL EEMKNMSRQE YVAHLRRKSS 420 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN 480 AVTNFDISRY DVERIMASST LLAGELARRT KEIAPNEEVA EYNALTQQKI GSDGTLQLES 540 SGNVTNGSDW KMVLYHSSPQ LQASCMESSV NSSQPSVDDT AKLGTRHLSN PSSLVTSLSS 600 SREASPDRAG SAFANKPPVV SKLVNTSPTS ASVTSWLPSP AHMRPSAIAM SHLPVFAAWN 660 DT* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.F02223.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018732061.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-151 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A059BRN1 | 0.0 | A0A059BRN1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010061621.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-127 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.F02223.1.p |