PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01575.1.p
Common NameEUGRSUZ_F01575, LOC104448762
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 309aa    MW: 33863.9 Da    PI: 7.4155
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01575.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.61.1e-31102158360
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                       +vrY+eCl+NhAas+Gg ++DGCgEfmp+ ge+gta al+CaAC+CHRnFHR+ev+ e
  Eucgr.F01575.1.p 102 SVRYRECLRNHAASVGGSVYDGCGEFMPA-GEDGTAGALRCAACECHRNFHRKEVDGE 158
                       69**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-22103156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.9E-29103155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.2E-28104155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.942105154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.5E-29232301IPR009057Homeodomain-like
SuperFamilySSF466893.74E-18233300IPR009057Homeodomain-like
TIGRFAMsTIGR015652.4E-28239296IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MELKPQEDDV TAPVSSLGFA HFALASRRID NGAPVLGAAP QTLDDHSPQQ RPILHPHQPH  60
PDDDVKPERE DSNPDPVSFA FSRSSALPAP AGSKPKPSPS PSVRYRECLR NHAASVGGSV  120
YDGCGEFMPA GEDGTAGALR CAACECHRNF HRKEVDGETL HLSTSFRRGL VPPLQLPPPP  180
LASPYQRYSV GVVHSPMVTP MSVAFGGGGG GNESSSEDLN LFGSDHLHRH AATAPPFSKK  240
RFRTKFTQEQ KDRMMEFAER VGWRIQKQNE EEVERFCGEI GVRRQVLKVW MHNNKNNVKN  300
KQPSEEPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-262382971675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01575.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060955.10.0PREDICTED: zinc-finger homeodomain protein 5
SwissprotQ9ZPW71e-61ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A059BP840.0A0A059BP84_EUCGR; Uncharacterized protein
STRINGXP_010060955.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-57homeobox protein 31