PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F01539.1.p | ||||||||
Common Name | EUGRSUZ_F01539, LOC104448727 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 403aa MW: 44635.8 Da PI: 4.8446 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.1 | 1.1e-12 | 17 | 118 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +deel +++ ++++ +++ +vi++v+ +++ P++Lp e+ wyf + ++ + ++ g+W g+ +e++ + g Eucgr.F01539.1.p 17 SDEELF-KFMFLMARADFVPA-NVITDVNPFNCLPETLP-----AENTWYFTNSMEN---------KGAEGGFWIPRGEPREIFG-DAFINGW 92 578887.45544455555556.78***************.....5688998665544.........44689**************.9999*** PP NAM 103 kktLvfykgrapkgektdWvmheyrl 128 +t fy+gr pk ekt+W m ey + Eucgr.F01539.1.p 93 EETHEFYEGRGPKVEKTNWSMLEYYM 118 ************************76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.161 | 8 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.22E-20 | 17 | 141 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-5 | 17 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MCPPAVAPLF DIKNISSDEE LFKFMFLMAR ADFVPANVIT DVNPFNCLPE TLPAENTWYF 60 TNSMENKGAE GGFWIPRGEP REIFGDAFIN GWEETHEFYE GRGPKVEKTN WSMLEYYMTS 120 KVSGEALSAK DAKSLCKVFH SSSSPLSDSK MLQNAVGTEF CRDNYLYSLP PDNFNIPTEQ 180 CVTNQMQVNT TSRNIMRRAS SFSPSHPMES LPELDHIESG DYLELLDLDI QQSPSSRSDN 240 SSCMTMLSDE IFDYLVAMLD SEAESGDHVE HRDAGCNLNV SDSSKPDDLV VQAVISGLPI 300 EERSSQNARD GKPVNRDGSP PLTLASQSRQ LSDSSQTPSA DGRNKTDGRL KKLKRKYLPT 360 SSSQSSDGSN SGRAPSPGPG GRRKTDGAFK KLRKKYLCFM PF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F01539.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060912.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 1 isoform X1 | ||||
TrEMBL | A0A059BPZ7 | 0.0 | A0A059BPZ7_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060912.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13708 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 3e-15 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F01539.1.p |
Entrez Gene | 104448727 |