PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01537.1.p
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 378aa    MW: 41811.6 Da    PI: 4.8018
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01537.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM416.1e-132011813128
               NAM  13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
                       el  +++   ++++ +++ +vi++v+ +++ P++Lp      e+ wyf           + +nr ++ g+W   g+ +e++  +    g  +t
  Eucgr.F01537.1.p  20 ELF-KFMFCMARADFFPA-NVITDVNPFNCLPETLP-----AENTWYFTN---------SMENRGAEGGFWMPRGEPREIFG-DAFINGWEET 95 
                       555.55555666666677.89**************9.....567898843.........356888899**************.9999****** PP

               NAM 106 LvfykgrapkgektdWvmheyrl 128
                         fy+gr pk ekt+W+m ey +
  Eucgr.F01537.1.p  96 HEFYEGRGPKVEKTNWLMLEYYM 118
                       *********************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.7568141IPR003441NAC domain
SuperFamilySSF1019414.97E-2125141IPR003441NAC domain
PfamPF023654.5E-544117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MCPPAVAPLF DIKNISSNEE LFKFMFCMAR ADFFPANVIT DVNPFNCLPE TLPAENTWYF  60
TNSMENRGAE GGFWMPRGEP REIFGDAFIN GWEETHEFYE GRGPKVEKTN WLMLEYYMTS  120
KVSGAALSAK DAKSLCKVFR SSSSPLSDSK MLQNAAGTEF RRENYLYFLP PDNFNIPTKQ  180
CVTNQMQVNT TSRNIMRRAS SFSPSHPIES LPELDHIDSG DYLELLDLDI PQSSSSRSDN  240
SSCMTMSSDE IFDYLVAILD SEAESGDHVE HRDADGIVVQ AAISGLPIEE RSSQNARDGK  300
PVNRDGSPPL TLASQSRQLS DSSQTPSADG RNKTDGSSQS SDGLNSGRAP SPGPGGRRKT  360
DGAFKKLRKK YLCFMPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01537.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060913.10.0PREDICTED: uncharacterized protein LOC104448728
TrEMBLA0A059BP340.0A0A059BP34_EUCGR; Uncharacterized protein
STRINGXP_010060913.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137081023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.14e-17NAC domain containing protein 58