PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.F01536.1.p | ||||||||
Common Name | EUGRSUZ_F01536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 421aa MW: 47071.7 Da PI: 4.4715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.2 | 2.2e-12 | 20 | 117 | 13 | 128 |
NAM 13 elvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105 el +++ ++++ +++ +vi++v+ +++ P++Lp e+ wyf + +nr ++ g+W g+ +e++ + g +t Eucgr.F01536.1.p 20 ELF-KFMFCMARADFFPA-NVITDVNPFNCLPETLP------ENTWYFTN---------SMENRGAEGGFWMPRGEAREIFG-DAFINGWEET 94 554.55555556666667.889*************9......46788743.........356898899**************.9999****** PP NAM 106 LvfykgrapkgektdWvmheyrl 128 fy+gr pk ekt+W+m ey + Eucgr.F01536.1.p 95 HEFYEGRGPKVEKTNWLMLEYYM 117 *********************76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 23.377 | 8 | 140 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-21 | 25 | 140 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-5 | 44 | 116 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 421 aa Download sequence Send to blast |
MCPPAVAPLF DIKNISSNEE LFKFMFCMAR ADFFPANVIT DVNPFNCLPE TLPENTWYFT 60 NSMENRGAEG GFWMPRGEAR EIFGDAFING WEETHEFYEG RGPKVEKTNW LMLEYYMTSK 120 VSGAALSAKD AKSLCKVFRS GSLPVSNSEM LQHAAGTEFR RENYLYSLSP DNFNIPTKQC 180 VTNQMQVNTT SCNILRRASS FFLSHPIESL PELDHIDPGD YLELLDLGIP QSPSSQSDNS 240 SCMTMLSDEI FDYLVAMLES EVESGEHVEH RDADCNLNVT DSSKPDDVVV QAAISGLPIE 300 EKSSQNARDG KPVNRDGSPP LTLASQSRQL SDSRQTPSAD GRNKADGSFE YMKHQLDAVS 360 LGKTCMVQLH QRRFGDKFWA YDGPTFLFLC LWTLSNASDW TLSSTAFWEA LSSRSLETIL 420 * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.F01536.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060915.1 | 0.0 | PREDICTED: NAC domain-containing protein 79 | ||||
TrEMBL | A0A059BPI2 | 0.0 | A0A059BPI2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060915.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13708 | 10 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18400.1 | 3e-16 | NAC domain containing protein 58 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.F01536.1.p |