PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01474.1.p
Common NameEUGRSUZ_F01474, LOC104448684
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 266aa    MW: 29658.5 Da    PI: 5.9676
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01474.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.62.4e-55831871102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw+ q   ie+++dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fd
  Eucgr.F01474.1.p  83 QLQMFWAGQmqeIEQTQDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFD 175
                       89****98877789******************************************************************************* PP

             NF-YC  91 flvdivprdelk 102
                       flvdi+prdelk
  Eucgr.F01474.1.p 176 FLVDIIPRDELK 187
                       *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.36E-3462177IPR009072Histone-fold
Gene3DG3DSA:1.10.20.109.5E-3896169IPR009072Histone-fold
PfamPF008081.8E-21105168IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDQTEQTQQQ QQQQQVVGVV AGTNQMAYAP PFPTAPVVAP GTPAVPIPSP TQAPSTFPGS  60
PHQLAYQQAQ HFHHQQHQQQ QQQLQMFWAG QMQEIEQTQD FKNHSLPLAR IKKIMKADED  120
VRMISAEAPV VFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDIAAAISR TDVFDFLVDI  180
IPRDELKEEG LGVTKATIPV VGSPADIPYY YVPPQHPMGH PSTIMGKPAD QAALYAAQQP  240
QPPVSFMPWP HAQSQQTQDD QQTNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5891183395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155161RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01474.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060857.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_010060858.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_010060859.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ8LCG72e-81NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBLA0A059BNQ50.0A0A059BNQ5_EUCGR; Uncharacterized protein
STRINGXP_010060857.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-81nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li S, et al.
    HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis.
    Plant Cell, 2014. 26(4): p. 1764-1780
    [PMID:24728648]
  3. Mei X, et al.
    Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm.
    Mol. Genet. Genomics, 2015. 290(5): p. 1819-31
    [PMID:25851237]
  4. Baud S, et al.
    Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed.
    Plant Physiol., 2016. 171(2): p. 1099-112
    [PMID:27208266]
  5. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]