PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01463.1.p
Common NameEUGRSUZ_F01463
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 317aa    MW: 35943.4 Da    PI: 8.1413
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01463.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.21.9e-50181543128
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                       pGfrFhPtdeelv +yL++kv++k++++++ i+++diyk++PwdLp+        + ++++kewyfF+kr +ky+++ r+nr+t sg+Wkatg
  Eucgr.F01463.1.p  18 PGFRFHPTDEELVGFYLRRKVDKKPMKIDHLISQIDIYKYDPWDLPSmtllflaeASDTGDKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATG 110
                       9***************************889***************5589998765566999******************************* PP

               NAM  88 kdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        dk+v+s+   ++e +glkktLv+y+g a kg+ktdW+mhe+rl
  Eucgr.F01463.1.p 111 IDKPVYSHggeGHECIGLKKTLVYYRGCAGKGTKTDWMMHEFRL 154
                       *******96655666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-5415185IPR003441NAC domain
PROSITE profilePS5100552.47316185IPR003441NAC domain
PfamPF023654.9E-2618154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MASLDAANAK PDDEVPLPGF RFHPTDEELV GFYLRRKVDK KPMKIDHLIS QIDIYKYDPW  60
DLPSMTLLFL AEASDTGDKE WYFFCKRGRK YRNSIRPNRV TGSGFWKATG IDKPVYSHGG  120
EGHECIGLKK TLVYYRGCAG KGTKTDWMMH EFRLPIDSPS PNSNIINKSI AQEAEVWTVC  180
RIFKRNVSYK KYTPDWRELP SKQATAKVGE TSSSKTCSVE CSDQESYINF GAPVNVTNYH  240
QNEKKPVVVG HHSTEKNQHQ MQLGALGAFS STSYLQAPSG ASSSSHFSSH VMEPLNYENW  300
DELRSVVEFA FDHHRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-451819119171NO APICAL MERISTEM PROTEIN
1ut4_B8e-451819119171NO APICAL MERISTEM PROTEIN
1ut7_A8e-451819119171NO APICAL MERISTEM PROTEIN
1ut7_B8e-451819119171NO APICAL MERISTEM PROTEIN
4dul_A8e-451819119171NAC domain-containing protein 19
4dul_B8e-451819119171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01463.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064537.10.0PREDICTED: transcription factor JUNGBRUNNEN 1
SwissprotQ9SK559e-81NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A059BPA40.0A0A059BPA4_EUCGR; Uncharacterized protein
STRINGXP_010064537.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-87NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]