PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F01204.1.p | ||||||||
Common Name | EUGRSUZ_F01204, LOC104448513 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | TCP | ||||||||
Protein Properties | Length: 415aa MW: 44803.3 Da PI: 7.1915 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.1 | 6.3e-38 | 41 | 164 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg...... 88 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++++ +++++ a++++ +a ++++ Eucgr.F01204.1.p 41 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDELAELPAWKPTATAAATRHPQATDERESpvdihq 133 79**************************************************************54444334222222222222222344445 PP TCP 89 ...kaaksaa.kskksqksaasalnlakesr 115 +aa+++ + +++q++++++ n +++s+ Eucgr.F01204.1.p 134 aavDAAADDIrNLQQQQQQQQQQINSHHQSN 164 5566666666577777777777778877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.2E-35 | 41 | 163 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.055 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGDNHHPQQA AATSSRLGMR RGGGGAGEIV EVQGGHIVRS TGRKDRHSKV CTAKGPRDRR 60 VRLSAHTAIQ FYDVQDRLGY DRPSKAVDWL IKKAKTAIDE LAELPAWKPT ATAAATRHPQ 120 ATDERESPVD IHQAAVDAAA DDIRNLQQQQ QQQQQQINSH HQSNPNTTSF LPPSLDSDSI 180 ADTIKSFFPM GVNPADAPPP PPSSVQFQSY HHHHQHPPDL LSRTSSQSQD LRLSLQSFQD 240 PVLLRPQSHD HHVVFSGTPQ LGFDSSPAAS LWPSEHTHHN TNPASDIGRY HRIAPWSVGG 300 SNGGGGGGGF MFSPPPPEAA TAAAQPLFGQ GQLFTQRGPL QSSNLPVIRA WIDPTLSSSD 360 HHHQMQHSIH PISPAGFASG VFPGYHIPAR IQGQDGEHDG ILDKPSSASS DSHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 48 | 101 | 1 | 54 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F01204.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060659.1 | 0.0 | PREDICTED: transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 1e-107 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A059BMM9 | 0.0 | A0A059BMM9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060659.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2408 | 27 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F01204.1.p |
Entrez Gene | 104448513 |