PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F01181.2.p | ||||||||
Common Name | EUGRSUZ_F01181, LOC104448497 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HB-other | ||||||||
Protein Properties | Length: 367aa MW: 40037 Da PI: 6.9391 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.3 | 4.7e-07 | 13 | 74 | 6 | 56 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.........TS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl.........gLterqVkvWFqNrRakek 56 +ft+ +++e+e+ ++ n p +e LA+k ++ +qV +WFqN+R+ + Eucgr.F01181.2.p 13 RFTAPEVTEMEAILQQhnNTMPAREVLVALAEKFsnaperkglAVQMKQVWNWFQNKRYSIR 74 6899999999999997668999*******************9999*************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.88E-9 | 4 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.3E-4 | 13 | 74 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.27E-4 | 13 | 74 | No hit | No description |
PROSITE profile | PS50071 | 9.734 | 13 | 76 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 13 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF16719 | 5.6E-42 | 125 | 251 | IPR032001 | SAWADEE domain |
CDD | cd00024 | 0.00958 | 144 | 179 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MGRPPSNGGP AFRFTAPEVT EMEAILQQHN NTMPAREVLV ALAEKFSNAP ERKGLAVQMK 60 QVWNWFQNKR YSIRAKTSKV PGKLNVSPFT RDDSIPMRSV MQPMAAPVSA PILAPIGRAA 120 SDNVMEFEAK SARDGAWYDV STFLAHRNLD TGDPEVLVRF SGFGAEEDEW VNIRKHVRMR 180 SLPCEASECV AVLPGDLILC FQEGKDQALY YDAHVLDAQR RRHDVRGCRC RFLVRYDHDE 240 SEEIVPLRKV CRRPETDYRL QQLHATDSAS AEQLKTGGDS STGLTPRTVS SSAETPQKQQ 300 VTGTSSVTPV SHESVPSATG VANVERRASA EVSSVIQTGS PNMPSGATAV STATPAGSAD 360 QAQEVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iuq_A | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 4e-48 | 125 | 255 | 4 | 134 | SHH1 SAWADEE |
4iur_B | 4e-48 | 125 | 255 | 4 | 134 | SHH1 SAWADEE |
4iut_A | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 4e-48 | 125 | 255 | 4 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F01181.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010060637.1 | 0.0 | PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2 | ||||
Swissprot | Q8RWJ7 | 1e-147 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A059BMK4 | 0.0 | A0A059BMK4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010060636.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18380.1 | 1e-136 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F01181.2.p |
Entrez Gene | 104448497 |