PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01181.1.p
Common NameEUGRSUZ_F01181, LOC104448497
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HB-other
Protein Properties Length: 371aa    MW: 40391.4 Da    PI: 6.9391
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01181.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.24.8e-071374656
                      S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC.........TS-HHHHHHHHHHHHHHHH CS
          Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl.........gLterqVkvWFqNrRakek 56
                      +ft+ +++e+e+  ++  n  p +e    LA+k           ++ +qV +WFqN+R+  +
  Eucgr.F01181.1.p 13 RFTAPEVTEMEAILQQhnNTMPAREVLVALAEKFsnaperkglAVQMKQVWNWFQNKRYSIR 74
                      5899999999999997668999*******************9999*************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-9475IPR009057Homeodomain-like
PfamPF000461.3E-41374IPR001356Homeobox domain
CDDcd000864.58E-41374No hitNo description
Gene3DG3DSA:1.10.10.601.5E-71378IPR009057Homeodomain-like
PROSITE profilePS500719.7341376IPR001356Homeobox domain
PfamPF167195.7E-42129255IPR032001SAWADEE domain
CDDcd000240.00972148183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFTAPEVT EMEAILQQHN NTMPAREVLV ALAEKFSNAP ERKGLAVQMK  60
QVWNWFQNKR YSIRAKTSKV PGKLNVSPFT RDDSIPMRSV MQPMAAPVSA PILAPIVPSA  120
GRAASDNVME FEAKSARDGA WYDVSTFLAH RNLDTGDPEV LVRFSGFGAE EDEWVNIRKH  180
VRMRSLPCEA SECVAVLPGD LILCFQEGKD QALYYDAHVL DAQRRRHDVR GCRCRFLVRY  240
DHDESEEIVP LRKVCRRPET DYRLQQLHAT DSASAEQLKT GGDSSTGLTP RTVSSSAETP  300
QKQQVTGTSS VTPVSHESVP SATGVANVER RASAEVSSVI QTGSPNMPSG ATAVSTATPA  360
GSADQAQEVI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A4e-481292594134SHH1 SAWADEE
4iur_B4e-481292594134SHH1 SAWADEE
4iut_A4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B4e-481292594134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01181.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060636.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
SwissprotQ8RWJ71e-149SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A059BMY40.0A0A059BMY4_EUCGR; Uncharacterized protein
STRINGXP_010060636.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73992437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-138sequence-specific DNA binding transcription factors;sequence-specific DNA binding