PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01091.1.p
Common NameEUGRSUZ_F01091, LOC104448414
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 367aa    MW: 40392.7 Da    PI: 8.9351
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01091.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-54161431128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhPtdeelvv+yLkkk+++++l++ +vi+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra++sgyWkatg+dk+vl
  Eucgr.F01091.1.p  16 LPPGFRFHPTDEELVVHYLKKKAASSPLPV-SVIAEVDIYKFDPWELPAKATYGEQEWYFFTPRDRKYPNGARPNRAATSGYWKATGTDKPVL 107
                       79****************************.99***************8888899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Eucgr.F01091.1.p 108 SAvGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 143
                       9988999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-659177IPR003441NAC domain
PROSITE profilePS5100562.05116177IPR003441NAC domain
PfamPF023653.4E-2817143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MESTDSSAGS AAQPHLPPGF RFHPTDEELV VHYLKKKAAS SPLPVSVIAE VDIYKFDPWE  60
LPAKATYGEQ EWYFFTPRDR KYPNGARPNR AATSGYWKAT GTDKPVLSAV GHQKVGVKKA  120
LVFYGGKPPK GVKTNWIMHE YRLIENKVSN RPPGCDVGNK KNSLRLDDWV LCRIYKKSNV  180
HRPMDHERDD SMDDMLESIP PSLTMNPHGM KLHLSKPSTT SYGVLFEHEQ NLFEGMMGAN  240
GGGCIPGNVM SHLASSSGLK PELAMVQAPN ISSPLPLKRT LHSLYWNDKD VAAETSDPSS  300
VKRQFSADRN DPGSVERNTN GGTSSIASLL GQIPQTPPLH QQTAYGPLGD GGFRPQFHMP  360
GLNWYA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-731217913167NO APICAL MERISTEM PROTEIN
1ut4_B7e-731217913167NO APICAL MERISTEM PROTEIN
1ut7_A7e-731217913167NO APICAL MERISTEM PROTEIN
1ut7_B7e-731217913167NO APICAL MERISTEM PROTEIN
3swm_A8e-731217916170NAC domain-containing protein 19
3swm_B8e-731217916170NAC domain-containing protein 19
3swm_C8e-731217916170NAC domain-containing protein 19
3swm_D8e-731217916170NAC domain-containing protein 19
3swp_A8e-731217916170NAC domain-containing protein 19
3swp_B8e-731217916170NAC domain-containing protein 19
3swp_C8e-731217916170NAC domain-containing protein 19
3swp_D8e-731217916170NAC domain-containing protein 19
4dul_A7e-731217913167NAC domain-containing protein 19
4dul_B7e-731217913167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01091.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060527.10.0PREDICTED: NAC transcription factor 56
SwissprotQ9LD441e-123NAC56_ARATH; NAC transcription factor 56
TrEMBLA0A059BMH40.0A0A059BMH4_EUCGR; Uncharacterized protein
STRINGXP_010060527.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-125NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]