PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F01069.1.p
Common NameEUGRSUZ_F01069, LOC104448388
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 369aa    MW: 41119.8 Da    PI: 7.3114
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F01069.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-181461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT eEd++lv++++++G g W+t ++  g++R++k+c++rw +yl
  Eucgr.F01069.1.p 14 KGPWTVEEDKKLVEYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding52.31.3e-1667111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rgr+T eE+e +++++  lG++ W++Ia+ ++ gRt++++k++w+++
  Eucgr.F01069.1.p  67 RGRFTFEEEETIIQLHGVLGNK-WSAIAAQLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.472965IPR017930Myb domain
SuperFamilySSF466891.31E-3111108IPR009057Homeodomain-like
SMARTSM007175.5E-151363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001672.24E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129420.36766116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002498.6E-1567111IPR001005SANT/Myb domain
CDDcd001672.01E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGKSPCCDKD GLKKGPWTVE EDKKLVEYIQ KHGHGKWRTL PKNAGLRRCG KSCRLRWTNY  60
LRPDIKRGRF TFEEEETIIQ LHGVLGNKWS AIAAQLPGRT DNEIKNYWNT HIKKRLLKMG  120
IDPVTHSPRL DLLDLSSILT SSLHAHYCSQ FINVPSSLNT NGYAMNPDFL DLTATLFSSS  180
FKSPEVTQNV QEITPEVLDQ FQYSLLANHL HNPPNNSHFL SENRPMHSNN ASEIPPSNAS  240
NFVSCHQNPM SSYWQADGDI QHQYMNIAET SVSVPNHGFD GSCRSNLDHF SSGHHVFQSN  300
DANKVQNFGL GSSLSSPMSS SLTWNSSSTT STAYLGGCNN EDRDGHSSHI MSSLYDAAPS  360
SFFVNGIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F01069.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060488.10.0PREDICTED: protein ODORANT1
TrEMBLA0A059BM260.0A0A059BM26_EUCGR; Uncharacterized protein
STRINGXP_010060488.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-85MYB-like 102