PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00740.1.p
Common NameEUGRSUZ_F00740
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 508aa    MW: 54634 Da    PI: 6.1058
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30277335259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+ kg+++pr+YYrC++a gCpv+k+v+r+aed++++++tYeg+Hnh+
  Eucgr.F00740.1.p 277 ADGCQWRKYGQKMAKGNPCPRAYYRCSMAiGCPVRKQVQRCAEDKTILVTTYEGQHNHP 335
                       7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-33261337IPR003657WRKY domain
SuperFamilySSF1182902.22E-27269337IPR003657WRKY domain
PROSITE profilePS5081129.677271337IPR003657WRKY domain
SMARTSM007743.4E-36276336IPR003657WRKY domain
PfamPF031062.7E-26278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDGSRHGAVS AAVAATSAAG REDRVFNELN FFAIDKSSRE EASSASAVKS ENVEESVEED  60
KEMKLNTGLN LLTENIGSDK SLVDEEAPGN EQRCLNLTEM AVLKAELDRM NMENQRLKSM  120
IYQVNNNCHA LQGHLLSLMQ RHGANPPAET ADSDKVFVNV NGRTLEDREK FPGKDENSQS  180
FSGDKTRDGL GSPHNNIVES MEYFKTPRES SANEVTPFRD PNKSESIDHR QRRDDAPWSP  240
TKVQKIGSSA DQAAETMAMI KKARVSVRAR SEAAMIADGC QWRKYGQKMA KGNPCPRAYY  300
RCSMAIGCPV RKQVQRCAED KTILVTTYEG QHNHPLPQAA VAMASTTSSA ASMILSGSMA  360
SSDGMMANSH YITGTASFPG SLPSLATLSA TAPFPTVTLD LTHTAPTNDT ITNPMKLQRP  420
LFLGSAMQSQ VGYALNQSEL LQVLSNQMNQ APSDMANTGG TTAAITADPN FTAALVAAIA  480
SVVGGIHPNH GGASDDVITR SRINENT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-22263337174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060309.20.0PREDICTED: WRKY transcription factor 42
TrEMBLA0A059BLU10.0A0A059BLU1_EUCGR; Uncharacterized protein
STRINGXP_010060309.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.12e-67WRKY family protein