PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00215.1.p
Common NameEUGRSUZ_F00215, LOC104447887
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HSF
Protein Properties Length: 351aa    MW: 39371.4 Da    PI: 7.5558
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00215.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27e-35261172102
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d++++ ++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll
  Eucgr.F00215.1.p  26 FLTKTYQLVDDPTTDYIVSWGDDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLL 109
                       9*****************************************************************99.........**************** PP

                       XXXXXXXX CS
      HSF_DNA-bind  95 ekikrkks 102
                       ++i+r+ks
  Eucgr.F00215.1.p 110 CEIHRRKS 117
                       ******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3718110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-5722115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.9E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-192649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.6E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-196476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MALLLENSCE GILLSLESQK SIPAPFLTKT YQLVDDPTTD YIVSWGDDET TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFRKIV PDRWEFANEF FRKGEKHLLC EIHRRKSPQP  120
QQVPINHQYP PSPIGGCGSY FPFVGGRVNC IAPPESDELT WCESSPLINT PNVSVVDNFV  180
SYNNGPSSSS PSSVVAALAK DNERLRRSNE MLTSELAHMR KLYNDIIYFV QNHVKPVTPS  240
NSIISNQAFG NFPATNGHKK HVAQVGNNLA DSPTNTSQSS VTILDEEDAT NCSSSKMKLF  300
GVPLRSKKRL HPDKYAPSKI AETNNNKARL VLENDELRLN LMPPSTFASY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-212211526129Heat shock factor protein 1
5d5v_B5e-212211526129Heat shock factor protein 1
5d5v_D5e-212211526129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00215.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639523e-68AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993543e-68AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAY3444943e-68AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059922.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-112HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A059BJL80.0A0A059BJL8_EUCGR; Uncharacterized protein
STRINGXP_010059922.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29002866
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-111heat shock transcription factor B4