PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F00192.1.p | ||||||||
Common Name | EUGRSUZ_F00192, LOC104447873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 167aa MW: 18782.8 Da PI: 9.6743 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.7 | 5.9e-18 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Eucgr.F00192.1.p 42 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYTTPIAAARAYDTAVFYLRG 91 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.115 | 42 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-36 | 42 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-21 | 42 | 100 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-30 | 43 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 43 | 54 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.42E-25 | 43 | 101 | No hit | No description |
Pfam | PF00847 | 4.9E-11 | 43 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.6E-12 | 81 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MEGEFFTATP TPTATGTTAE KRKQRQQQHH HHHHHHQQGE KPYRGIRMRK WGKWVAEIRE 60 PNKRSRIWLG SYTTPIAAAR AYDTAVFYLR GPSARLNFPE LVFQEDDELR DLSAASIRKK 120 ATEVGARVDA QASAAQPPAP EPNSSRVATE KPDLNEYPKA ENSDGD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-15 | 41 | 102 | 4 | 66 | ATERF1 |
3gcc_A | 6e-15 | 41 | 102 | 4 | 66 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00188 | DAP | Transfer from AT1G46768 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F00192.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023482 | 4e-53 | AB023482.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone P0680A03. | |||
GenBank | AK107775 | 4e-53 | AK107775.1 Oryza sativa Japonica Group cDNA clone:002-133-B12, full insert sequence. | |||
GenBank | AP002536 | 4e-53 | AP002536.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0015I14. | |||
GenBank | AP014962 | 4e-53 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012614 | 4e-53 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018732300.1 | 1e-121 | PREDICTED: ethylene-responsive transcription factor RAP2-1 | ||||
Swissprot | Q8LC30 | 1e-52 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A059BJU1 | 1e-120 | A0A059BJU1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059904.1 | 1e-121 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 1e-50 | related to AP2 1 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F00192.1.p |
Entrez Gene | 104447873 |
Publications ? help Back to Top | |||
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