PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F00115.1.p | ||||||||
Common Name | EUGRSUZ_F00115, LOC104447816 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 24837.2 Da PI: 7.6418 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 91 | 1.4e-28 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C+++Cvl+ ++ p++q +++ +++++FG+s +l+l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++ Eucgr.F00115.1.p 2 SCNGCRVLRKGCSESCVLRSCLrwipsPEAQGNATLFLARFFGRSDLLSLVAAVPDSQRPALFQSLLFEACGRTVNPVGGAVGLLSSGNWHVC 94 6************************999999************************************************************** PP DUF260 89 qlkaela 95 ++++e++ Eucgr.F00115.1.p 95 EAAVETV 101 **99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.285 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCVLR SCLRWIPSPE AQGNATLFLA RFFGRSDLLS LVAAVPDSQR 60 PALFQSLLFE ACGRTVNPVG GAVGLLSSGN WHVCEAAVET VLDGGVVQAL CGGAATLAFG 120 LDQSADSPFF PPSTCRGQSL QQSLQVPASI QVDVNLTLPL YDPDLSFKEK LPGKRRGKRS 180 HVTNNWPTRT TTTTTAAATT RLSSEASEVI DPPSGYDHGG VGPGGQETKL LNLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F00115.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059846.1 | 1e-171 | PREDICTED: LOB domain-containing protein 37 | ||||
TrEMBL | A0A059BK71 | 1e-170 | A0A059BK71_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059846.1 | 1e-171 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM821 | 28 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-56 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F00115.1.p |
Entrez Gene | 104447816 |