PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00106.1.p
Common NameEUGRSUZ_F00106
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 388aa    MW: 44017.7 Da    PI: 6.7246
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-093143492055
                       HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Eucgr.F00106.1.p 314 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 349
                       4679*****************************885 PP
2ELK37.84e-13269290122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK++LlrKYsgyL+sLkqE+s
  Eucgr.F00106.1.p 269 ELKNHLLRKYSGYLSSLKQELS 290
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-21121165IPR005540KNOX1
PfamPF037901.1E-22122164IPR005540KNOX1
SMARTSM012561.4E-23172226IPR005541KNOX2
PfamPF037916.8E-20177224IPR005541KNOX2
PfamPF037892.7E-10269290IPR005539ELK domain
PROSITE profilePS5121311.296269289IPR005539ELK domain
SMARTSM011883.5E-7269290IPR005539ELK domain
PROSITE profilePS5007113.005289352IPR001356Homeobox domain
SuperFamilySSF466895.13E-20290365IPR009057Homeodomain-like
SMARTSM003898.8E-13291356IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-27294355IPR009057Homeodomain-like
CDDcd000862.25E-12301353No hitNo description
PfamPF059201.5E-16309348IPR008422Homeobox KN domain
PROSITE patternPS000270327350IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MEEYGQMNEN SSTGSRGNNS FLYASPVLGP SSSGNSNYGR GNSSGGHFYS QSSDHCFQSE  60
APPHPVVKTE ATTSHHGHAQ KFHHYSLVRD HHDPSASHHH HHQHHQHQQL QTASESSREV  120
DAMKAKIIAH PQYSNLLEAY MDCQKVGAPP EVVAKLSVAR QEFESRQRSS VASADGSKDP  180
ELDQFMVTLE AYYDMLVKYR DELTRPLQEA MDFMRRIETQ LNLLSNNGPV RVFNSDEKCE  240
GVGSSEEDQD NSGGETELPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK  300
EARQKLLSWW ELHYKWPYPS ETEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV  360
MDGLHPQGAA LYMDGHYIGD GPYRLGP*
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00106.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059832.10.0PREDICTED: homeobox protein knotted-1-like 2
RefseqXP_010059833.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A059BK600.0A0A059BK60_EUCGR; Uncharacterized protein
STRINGXP_010059832.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65662335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-140KNOTTED-like from Arabidopsis thaliana