PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.F00098.1.p | ||||||||
Common Name | EUGRSUZ_F00098, LOC104447800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | AP2 | ||||||||
Protein Properties | Length: 541aa MW: 59443.3 Da PI: 8.0443 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.9e-17 | 204 | 263 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++t+e+Aa+a++ a++k++g Eucgr.F00098.1.p 204 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDTEEKAARAYDLAALKYWG 263 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 48.5 | 2.1e-15 | 306 | 357 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I ++ +k +lg+f t eeAa+a++ a+ k++g Eucgr.F00098.1.p 306 SIYRGVTRHHQHGRWQARIGRVTG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 357 57****************999644...4************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.37E-22 | 204 | 270 | No hit | No description |
Pfam | PF00847 | 2.2E-13 | 204 | 263 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-17 | 204 | 272 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.2E-29 | 205 | 277 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.48 | 205 | 271 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 205 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 206 | 217 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-18 | 306 | 367 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.74E-24 | 306 | 367 | No hit | No description |
Pfam | PF00847 | 1.1E-9 | 306 | 357 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.4E-34 | 307 | 371 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 307 | 365 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-18 | 307 | 366 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-6 | 347 | 367 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MDVPSSQPHH HHPYCHQTQF PSVTTDAGSV PLSLSYEVGE VSNAGFFHSP LCVMPVKSDG 60 SLCLMEDLTR SQTQGMMPSS APKLEDFLGV HYSGRQDGEA QLGYSELVYR ASMEEETNGM 120 SRLGNVVSVD DCTVSGSVSV HGKESGGFYS QIQSGCVALT APRQFSPAIN TESLARETRK 180 RALEVDRKLP VPRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQSRKGRQVY 240 LGGYDTEEKA ARAYDLAALK YWGPSTHINF SLENYRKELE EMKTMSRLEY IAHLRRRSSG 300 FSRGASIYRG VTRHHQHGRW QARIGRVTGN KDLYLGTFTT QEEAAEAYDI AAIKFRGVNA 360 VTNFDVSRYD VEKIMTSNTL LAGELVRRNK EAAPRYDMGY LTSGEAPQSI DGNGLGWKIV 420 LHESPQGQPN DVAKSLDQKS IARSDQISSL SMALQHISDE GNRGRASFAD PSSAVTGLGN 480 SQDGAPDRTC SNTLLGKPVS VPEFTNAPPG CISSWLHSTR LISAPISGSR SPVFTALSEI 540 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.F00098.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010059818.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q38914 | 1e-141 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A059BKN4 | 0.0 | A0A059BKN4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010059818.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3137 | 28 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.F00098.1.p |
Entrez Gene | 104447800 |