PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00044.2.p
Common NameEUGRSUZ_F00044
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 361aa    MW: 40645.7 Da    PI: 7.1865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00044.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-1338924098
                      ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +sg +W+v       ++  +++ GW++Fvk++ L+ +D++vF+++g+s+f  +v vf+
  Eucgr.F00044.2.p 38 GPSGATWKVGT--VADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 92
                      5899*******..999999****************************9999..777775 PP
2B343.36.5e-14249333188
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       f+ v+ p +v k+  l++p + a++h+    ++++++l+     +W  +++ ++++++  l++GWk+F  +n+L++ D++vF l ++ s
  Eucgr.F00044.2.p 249 FLVVMRPTHVYKRFYLSIPTDWATTHMDR--RNQDVILRV-GEGTWHARYRLTGRGSG-GLSSGWKNFTLENNLEQSDVCVFNLADSiS 333
                       788999********************877..555788877.5569*****88554444.59**********************987643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0112594IPR003340B3 DNA binding domain
CDDcd100175.40E-103792No hitNo description
SuperFamilySSF1019364.71E-133793IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-143893IPR015300DNA-binding pseudobarrel domain
PfamPF023623.3E-103891IPR003340B3 DNA binding domain
PROSITE profilePS5086311.8433994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.9E-19246344IPR015300DNA-binding pseudobarrel domain
CDDcd100174.60E-12248344No hitNo description
SuperFamilySSF1019361.55E-16248344IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-9249346IPR003340B3 DNA binding domain
PfamPF023627.2E-12249333IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534249346IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEGTCKECKS WEEEIYWTHF HSIHFCQFLQ GDFHQQLGPS GATWKVGTVA DDENLLFKHG  60
WQDFVKDHAL EKNDILVFRY NGESSFNVLV FNQHSLCEKE AAYFHKRCSH NPADRECGTK  120
RKLGDSSVEA MHTPVSHDVK RTLTEDPRED RTVTVADRNI LSQAKASENL IEAGASGKPR  180
NKKATPKKKL SVAFDCLEEK PAAQDSTPKS LFIGSRGSPV YVSNRRPVTE EEESSAFKLA  240
RAAASSDSFL VVMRPTHVYK RFYLSIPTDW ATTHMDRRNQ DVILRVGEGT WHARYRLTGR  300
GSGGLSSGWK NFTLENNLEQ SDVCVFNLAD SISKNIILDV TIFRVVEDIV PPTLVNSFSV  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1622334922146B3 domain-containing transcription factor VRN1
4i1k_B5e-1622334922146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00044.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059786.10.0PREDICTED: B3 domain-containing protein REM16 isoform X4
TrEMBLA0A059BJJ90.0A0A059BJJ9_EUCGR; Uncharacterized protein
STRINGXP_010059782.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-38B3 family protein