PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.F00044.1.p
Common NameEUGRSUZ_F00044
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 379aa    MW: 42752.2 Da    PI: 7.8325
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.F00044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.3e-20341131398
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++l +pkkfae+  +k   +  ++l+ +sg +W+v       ++  +++ GW++Fvk++ L+ +D++vF+++g+s+f  +v vf+
  Eucgr.F00044.1.p  34 HQQLAIPKKFAENLRSK--LPENVVLKGPSGATWKVGT--VADDENLLFKHGWQDFVKDHALEKNDILVFRYNGESSF--NVLVFN 113
                       678********777655..6678***************..999999****************************9999..777775 PP
2B343.27.1e-14267351188
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                       f+ v+ p +v k+  l++p + a++h+    ++++++l+     +W  +++ ++++++  l++GWk+F  +n+L++ D++vF l ++ s
  Eucgr.F00044.1.p 267 FLVVMRPTHVYKRFYLSIPTDWATTHMDR--RNQDVILRV-GEGTWHARYRLTGRGSG-GLSSGWKNFTLENNLEQSDVCVFNLADSiS 351
                       788999********************877..555788877.5569*****88554444.59**********************987643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.76222115IPR003340B3 DNA binding domain
SuperFamilySSF1019361.35E-2123114IPR015300DNA-binding pseudobarrel domain
CDDcd100173.42E-1824113No hitNo description
Gene3DG3DSA:2.40.330.108.2E-2424114IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.5E-1725115IPR003340B3 DNA binding domain
PfamPF023627.5E-1734112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-18264362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.69E-16266362IPR015300DNA-binding pseudobarrel domain
CDDcd100177.70E-12266362No hitNo description
PfamPF023628.2E-12267351IPR003340B3 DNA binding domain
SMARTSM010191.2E-9267364IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534267364IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEGTCKECKS WEEEIYWTHF HSIHFCQFLQ GDFHQQLAIP KKFAENLRSK LPENVVLKGP  60
SGATWKVGTV ADDENLLFKH GWQDFVKDHA LEKNDILVFR YNGESSFNVL VFNQHSLCEK  120
EAAYFHKRCS HNPADRECGT KRKLGDSSVE AMHTPVSHDV KRTLTEDPRE DRTVTVADRN  180
ILSQAKASEN LIEAGASGKP RNKKATPKKK LSVAFDCLEE KPDSTPKSLF IGSRGSPVYV  240
SNRRPVTEEE ESSAFKLARA AASSDSFLVV MRPTHVYKRF YLSIPTDWAT THMDRRNQDV  300
ILRVGEGTWH ARYRLTGRGS GGLSSGWKNF TLENNLEQSD VCVFNLADSI SKNIILDVTI  360
FRVVEDIVPP TLVNSFSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A7e-1624136722146B3 domain-containing transcription factor VRN1
4i1k_B7e-1624136722146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.F00044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059786.10.0PREDICTED: B3 domain-containing protein REM16 isoform X4
TrEMBLA0A059BJD00.0A0A059BJD0_EUCGR; Uncharacterized protein
STRINGXP_010059782.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-66B3 family protein