PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.F00039.1.p

Common Name

EUGRSUZ_F00039, LOC104447770

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 256aa MW: 25484.1 Da PI: 8.3828

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.F00039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	2.9e-39	28	87	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++al+cprCdstntkfCy+nny+lsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk +ss Eucgr.F00039.1.p 28 TEALPCPRCDSTNTKFCYFNNYNLSQPRHFCKSCRRYWTQGGTLRNVPVGGGSRKASSSS 87 6889***************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	26	76	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-33	30	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.217	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MPSDARPQAS AAAAAGGAGL HPHPPPQTEA LPCPRCDSTN TKFCYFNNYN LSQPRHFCKS 60 CRRYWTQGGT LRNVPVGGGS RKASSSSSSK RPRSLAPPTS SSPCSNSNSS SVSQEPLHGD 120 HSGLLLAQVK SEVGSGDQVK RTENVAGPGV GSGHQGFTSL LGSPGGQGFL ALGGLGLGTG 180 LDGLGFGFGR GVWPFNEVGF VDGGGVYGGG GGGGPVAAAG GNAWQMGSGE GGGLVDGDGF 240 AWPELAISMP GQGLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.F00039.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK354149	1e-54	AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20.
GenBank	AK360934	1e-54	AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17.
GenBank	AK377058	1e-54	AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010059780.1	0.0	PREDICTED: dof zinc finger protein DOF1.6
TrEMBL	A0A059BKI4	1e-180	A0A059BKI4_EUCGR; Uncharacterized protein
STRING	XP_010059780.1	1e-180	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66940.1	6e-28	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.F00039.1.p
Entrez Gene	104447770