PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E03467.1.p
Common NameEUGRSUZ_E03467, LOC104445360
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 316aa    MW: 34547 Da    PI: 4.4679
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E03467.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.9e-16150243192
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+++l+ sd+++  r+v+pkk+ae+h  +++++e+  l++++ +g +W +++++  +++s++y+l+ G     ++ +L++gD+v+F++ +  e
  Eucgr.E03467.1.p 150 FEQTLSASDAGEIERIVVPKKCAEAHfpSISQPEGLPLKVQNAKGLEWIFQFKFqpNNNSRTYFLE-GVTPCIQSMQLQAGDIVTFSRLE-PE 240
                       8999************************666677788***************99989999999999.********************655.55 PP

                       E.. CS
                B3  90 fel 92 
                       ++l
  Eucgr.E03467.1.p 241 GKL 243
                       544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-24146246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-15147245IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-17148246No hitNo description
PROSITE profilePS508639.559150251IPR003340B3 DNA binding domain
PfamPF023621.0E-12150241IPR003340B3 DNA binding domain
SMARTSM010196.7E-12150249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDDFSDRPMN KKIKLGPDEE LENGIAGPNS DDHLNPCEIN PQQSTSEKED PSTPPCGLAV  60
PHASGDEPNG HIGLVGPHFR PAPPPTIAKH FYGSTLSDTN SSGESRTRNG RPRGDARGRS  120
QLLPRYWPRI TDQELQQISG DSNSVITPLF EQTLSASDAG EIERIVVPKK CAEAHFPSIS  180
QPEGLPLKVQ NAKGLEWIFQ FKFQPNNNSR TYFLEGVTPC IQSMQLQAGD IVTFSRLEPE  240
GKLVMRPSTA PPSDQKGRDG EEPREEEDAS ISEQRPEQQL GESFEQSDAH LQGNMRKGGA  300
EAEAGEEDVE EANTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-561282451118B3 domain-containing transcription repressor VAL1
5yzz_C2e-561282451118B3 domain-containing transcription repressor VAL1
5z00_C2e-561282451118B3 domain-containing transcription repressor VAL1
5z00_G2e-561282451118B3 domain-containing transcription repressor VAL1
5z00_K2e-561282451118B3 domain-containing transcription repressor VAL1
5z00_M2e-561282451118B3 domain-containing transcription repressor VAL1
6j9a_A1e-561282452119B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E03467.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010057548.10.0PREDICTED: B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G47e-80Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A059C9120.0A0A059C912_EUCGR; Uncharacterized protein
STRINGXP_010057548.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-65HSI2-like 1