PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E03465.1.p
Common NameEUGRSUZ_E034652
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 543aa    MW: 59557.1 Da    PI: 6.8425
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E03465.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.73.7e-17297598
                      -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                      l+ sd++k grlvlpkk+ae++  +++++e+  l+++d +g +W +++++  +++s++yvl+ G     ++ +L++gD+v+F++ +  e++lv++
  Eucgr.E03465.1.p  2 LSASDAGKIGRLVLPKKCAEAYfpSISQPEGLPLKVQDAKGSEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDIVTFSRLE-PEGKLVMG 94
                      5789********************666677788***************9989999999***9.********************766.77777777 PP

                      EE- CS
                B3 96 vfr 98
                      +++
  Eucgr.E03465.1.p 95 FRK 97
                      776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.659199IPR003340B3 DNA binding domain
SMARTSM010191.0E-14199IPR003340B3 DNA binding domain
CDDcd100171.80E-18297No hitNo description
Gene3DG3DSA:2.40.330.105.0E-272106IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-14297IPR003340B3 DNA binding domain
SuperFamilySSF1019362.62E-16297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5105013.991227277IPR011124Zinc finger, CW-type
PfamPF074961.7E-12232274IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MLSASDAGKI GRLVLPKKCA EAYFPSISQP EGLPLKVQDA KGSEWIFQFR FWPNNNSRMY  60
VLEGVTPCIQ SMQLQAGDIV TFSRLEPEGK LVMGFRKAST APPSDQENET AKSNSGITVQ  120
DAELADPSSW SKVDKSGYIA KEVLGAKSAL PRKRKSSTLG SKSKRLRIEN EDVIELKLTW  180
EEAQGLLRPP PPPNHIPSVV VIEGFEFEEY EDAPVLGKPT VFRTDTVGKK IQWAQCEDCL  240
KWRKLPADAL LPSKWTCADN SWDPERSSCS ADQDLTAEEL EDMLSNNNPA PSKKAKAPKQ  300
ENMEALEGLD TLANLAILGE GEVLPSSSSS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH  360
KPTCTCNVCL TVKRRFRTLM LRREKKQSEK EGEGSRKKLQ HQNLSLAEKS PEDDPSQCNN  420
NIANGSPSQK KVGNDGSDDE MNRVKSSGSP FKGQIDLNIQ PEREEELSPG SDSGGMVKLQ  480
HVAPQKYPRQ RVLTQDSFRN STGDPAVVDL DGGERLVSDT VESGQQEVNE ERAKALASTV  540
HK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C6e-53210127126B3 domain-containing transcription repressor VAL1
5yzz_C6e-53210127126B3 domain-containing transcription repressor VAL1
5z00_C6e-53210127126B3 domain-containing transcription repressor VAL1
5z00_G6e-53210127126B3 domain-containing transcription repressor VAL1
5z00_K6e-53210127126B3 domain-containing transcription repressor VAL1
5z00_M6e-53210127126B3 domain-containing transcription repressor VAL1
6j9a_A5e-53210128127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E03465.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887956.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A059C8P90.0A0A059C8P9_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010059360.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68572536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-136HSI2-like 1