PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E03261.1.p

Common Name

EUGRSUZ_E03261

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 357aa MW: 38391.6 Da PI: 8.6224

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E03261.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	3.9e-39	33	91	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Eucgr.E03261.1.p 33 QPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 91 679*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-26	36	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MIDEKRLNNS MASTGSPLME KNTPPQQQQQ QLQPLKCPRC DSSNTKFCYY NNYSLSQPRH 60 FCKACKRYWT RGGTLRNVPV GGGCRKNKRV KRPASASATD TAPSSSASAT SDHHPPPHKT 120 HMENLSSSCS NHNSNPMNLG PLFYGNPADQ MSNNLAFPRL TSSSSLYDLH PQLSALGLGF 180 SSSAIIPANS CADTSSLQEG FNANNASGLN VQDLAQITNP LLLPSYSSMF GTSSSPSSSS 240 SCSTTTTIAS LLASSFHHQQ QKFINASGLR ESRALVHNNF KPMSPVEEFQ GLRSNSEVRI 300 EGGQSRNIGW NGSIPCQNPV DQIGLSADPG SICWSSLNVG NSWHDPTSIG LHQSLL*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MIDEKRLNNS MASTGSPLME KNTPPQQQQQ QLQPLKCPRC DSSNTKFCYY NNYSLSQPRH  60
FCKACKRYWT RGGTLRNVPV GGGCRKNKRV KRPASASATD TAPSSSASAT SDHHPPPHKT  120
HMENLSSSCS NHNSNPMNLG PLFYGNPADQ MSNNLAFPRL TSSSSLYDLH PQLSALGLGF  180
SSSAIIPANS CADTSSLQEG FNANNASGLN VQDLAQITNP LLLPSYSSMF GTSSSPSSSS  240
SCSTTTTIAS LLASSFHHQQ QKFINASGLR ESRALVHNNF KPMSPVEEFQ GLRSNSEVRI  300
EGGQSRNIGW NGSIPCQNPV DQIGLSADPG SICWSSLNVG NSWHDPTSIG LHQSLL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E03261.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057393.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A059C9E6	0.0	A0A059C9E6_EUCGR; Uncharacterized protein
STRING	XP_010057393.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-34	Dof family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E03261.1.p