PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E03226.2.p | ||||||||
Common Name | EUGRSUZ_E03226, LOC104445234 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 34887.1 Da PI: 8.1506 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.1 | 4.3e-33 | 61 | 201 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp G++F+P+d+e++ e+L++k++++ + + +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Eucgr.E03226.2.p 61 LPSGVKFDPNDQEIL-EHLEAKAAADArkihplI---DefipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHgdt 148 699***********9.99***9998885554332...132222333336**********.566677888******************844444 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++vl +g++ g kk+Lv+y gr++k+ekt+Wvmh+y+l Eucgr.E03226.2.p 149 dggETRWHKTGKTRPVLI-GGAVRGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 201 444667************.9*************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-37 | 54 | 220 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.73 | 61 | 220 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-14 | 62 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MTWCNNSDPE GKAIQIVAGD ASRGNCIIDP QGSAVRTVTC PSCGHNIELL DQGMIHDLPG 60 LPSGVKFDPN DQEILEHLEA KAAADARKIH PLIDEFIPTL EGENGICYTH PEKLPGVSKD 120 GQVRHFFHRP SKAYTTGTRK RRKVHGDTDG GETRWHKTGK TRPVLIGGAV RGFKKILVLY 180 TNYGRQRKPE KTNWVMHQYH LGDNEEEKDG ELVMSKVFYQ TQPRQCGASV RDPSLDKRYT 240 KEHQVLHGTS VVDYYNYSNP NFISNYDQVN PNRESPPQLI PNLVVQGDGS SFIQFTPDAS 300 KGKLVRNRDG GGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-11 | 61 | 201 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E03226.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057358.1 | 0.0 | PREDICTED: NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-119 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A059C9B1 | 0.0 | A0A059C9B1_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057358.1 | 0.0 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-121 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E03226.2.p |
Entrez Gene | 104445234 |
Publications ? help Back to Top | |||
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