PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E02863.2.p | ||||||||
Common Name | EUGRSUZ_E02863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26237.8 Da PI: 9.6367 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.2 | 7.1e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLC+aeva+i+fss+g+lyey+ Eucgr.E02863.2.p 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCEAEVALIVFSSRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 103.5 | 2.7e-34 | 91 | 189 | 2 | 100 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 ++ss+ s++ea+ + +qqe+akL+++i+n+q+++R+l+G+++ +++k+++ eq+Lek++ kiR+kKnell+++ie++qk+e +l+++n+ L Eucgr.E02863.2.p 91 DSSSSGSVSEANVQFYQQESAKLQQQINNMQNNNRQLVGDSIAGMNMKDMKTTEQKLEKAIAKIRAKKNELLFAEIEYMQKREIDLHNNNQVL 183 55666779************************************************************************************* PP K-box 95 rkklee 100 r+k++e Eucgr.E02863.2.p 184 RAKIAE 189 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.9E-42 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.669 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.18E-32 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.59E-44 | 18 | 87 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-32 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.8E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-32 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-32 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-23 | 101 | 187 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.409 | 103 | 193 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MVFPTQATPE ESPQRKMGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCEAEVA 60 LIVFSSRGRL YEYANDSVKA TIERYKKACS DSSSSGSVSE ANVQFYQQES AKLQQQINNM 120 QNNNRQLVGD SIAGMNMKDM KTTEQKLEKA IAKIRAKKNE LLFAEIEYMQ KREIDLHNNN 180 QVLRAKIAES ERTQHADMNL MPGGTNYDFM QPSSSQPFDS RNYFQVNVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 3e-20 | 17 | 85 | 1 | 69 | MEF2C |
5f28_B | 3e-20 | 17 | 85 | 1 | 69 | MEF2C |
5f28_C | 3e-20 | 17 | 85 | 1 | 69 | MEF2C |
5f28_D | 3e-20 | 17 | 85 | 1 | 69 | MEF2C |
6c9l_A | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E02863.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB465730 | 0.0 | AB465730.1 Eucalyptus grandis AGL mRNA for agamous-like protein, complete cds, clone: EgAGL2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057185.1 | 1e-171 | PREDICTED: glycogen debranching enzyme isoform X2 | ||||
Refseq | XP_010057186.1 | 1e-171 | PREDICTED: glycogen debranching enzyme isoform X2 | ||||
Swissprot | Q40885 | 1e-124 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A059C6W4 | 1e-170 | A0A059C6W4_EUCGR; Uncharacterized protein | ||||
STRING | XP_010057183.1 | 1e-148 | (Eucalyptus grandis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-102 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E02863.2.p |
Entrez Gene | 104445074 |
Publications ? help Back to Top | |||
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