PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E02798.1.p | ||||||||
Common Name | EUGRSUZ_E02798 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 246aa MW: 27127.5 Da PI: 8.4984 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.6e-19 | 77 | 131 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++ eq +Lee F+++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k Eucgr.E02798.1.p 77 RKKLRLSGEQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARSK 131 6788899**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122.7 | 1.8e-39 | 77 | 166 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rls eq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRAR k+kq+ +d+e+Lkr++d+l++en+rL+kev+eLr +l Eucgr.E02798.1.p 77 RKKLRLSGEQSLVLEETFKEHNTLNPKQKLALAKQLNLSPRQVEVWFQNRRARSKMKQTKVDCEYLKRCCDNLTQENKRLQKEVQELR-AL 166 69*************************************************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 5.7E-12 | 2 | 47 | IPR006712 | HD-ZIP protein, N-terminal |
Gene3D | G3DSA:1.10.10.60 | 6.7E-19 | 60 | 133 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.6E-19 | 64 | 134 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.427 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.6E-17 | 75 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.44E-16 | 77 | 131 | No hit | No description |
Pfam | PF00046 | 1.6E-16 | 77 | 131 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.1E-9 | 133 | 167 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.0E-24 | 133 | 176 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
TNSKTRPFFG GVGVNRDILV VDLDDDNHVS SPNSTVSSIS GKRSERDPHG ENEVEAERTS 60 CSCESIEEDG SGGDGARKKL RLSGEQSLVL EETFKEHNTL NPKQKLALAK QLNLSPRQVE 120 VWFQNRRARS KMKQTKVDCE YLKRCCDNLT QENKRLQKEV QELRALKLSP QLYMHMNPPT 180 TLTMCPSCQR VSVPSASLSP PSSSSVTASV IGPIGPVHNP FSQSGPSINS WARLQMQQGL 240 NNLHS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARSKMKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E02798.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010057133.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-4 | ||||
Swissprot | P46602 | 6e-86 | HAT3_ARATH; Homeobox-leucine zipper protein HAT3 | ||||
TrEMBL | A0A059C7J0 | 0.0 | A0A059C7J0_EUCGR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010057133.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2577 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 5e-59 | homeobox-leucine zipper protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E02798.1.p |
Publications ? help Back to Top | |||
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