PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02652.1.p
Common NameEUGRSUZ_E02652
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 251aa    MW: 28077.6 Da    PI: 5.1199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02652.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20107157255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrd      k +r++lg+f+taeeAa a+++a+++++g
  Eucgr.E02652.1.p 107 HYRGVRRRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAALAYDKAALRIRG 157
                       7********.**********3...2234*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-32106166IPR001471AP2/ERF domain
PROSITE profilePS5103224.092107165IPR001471AP2/ERF domain
SMARTSM003802.7E-37107171IPR001471AP2/ERF domain
PfamPF008473.4E-15107157IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-24107167IPR016177DNA-binding domain
CDDcd000184.67E-29107166No hitNo description
PRINTSPR003672.2E-11108119IPR001471AP2/ERF domain
PRINTSPR003672.2E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEKNLNSTTS EPILENVWAS FIGATPPEPS KTWEQLPSLD ERTGSVGMLQ RLPSLGRWVS  60
MGSEAWEEIL GEIVPGMAQS DVKDRTSGSC SEAEVTSRGA KAVVARHYRG VRRRPWGKYA  120
AEIRDSSRKG ARVWLGTFDT AEEAALAYDK AALRIRGPKA YLNFPIEQVV QAIHKDSRGC  180
NHALPSLEEQ IVNPGKRTRE WERFDGGMMN EGRPLKRVER TEESRWIDEF DVVEFEDLGN  240
DLLDSLLSCL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27106166464ATERF1
3gcc_A2e-27106166464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02652.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058963.11e-172PREDICTED: ethylene-responsive transcription factor ERF091
SwissprotO495158e-43ERF91_ARATH; Ethylene-responsive transcription factor ERF091
TrEMBLA0A059C6E10.0A0A059C6E1_EUCGR; Uncharacterized protein
STRINGXP_010058963.11e-172(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-34ERF family protein