PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E02053.1.p

Common Name

EUGRSUZ_E02053

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 167aa MW: 18928.8 Da PI: 9.192

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E02053.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.7e-10	51	156	3	96
EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvF 82 k lt+sd + ++rl + ++ +++h + ++ ++ +++++d +g + ++ + ++ +sg y l++GW keFvk L++gD v + Eucgr.E02053.1.p 51 KRLTQSDLGHLSRLLIGRDLVKSHflrwmneetvrQVENGKGADVIVRDmDTGSEHRLVFVFWASSGCYALKGGWiKEFVKRRALEVGDEVGI 143 889***********************9888887555558999*8889999999999*********999************* PP EE-SS.SEE..EEEE CS B3 83 kldgr.sefelvvkv 96 + ++ se+++++++ Eucgr.E02053.1.p 144 Y--WDpSERKFHFSL 156 9..666777777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.75E-15	49	155	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.1E-15	49	155	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.87E-17	50	157	No hit	No description
Pfam	PF02362	1.2E-7	51	155	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MASLTNAESL IAEKKAKCKR TQKGKKEASG CDAEEVSTEL TLLFDPYKVK KRLTQSDLGH 60 LSRLLIGRDL VKSHFLRWMN EETVRQVENG KGADVIVRDM DTGSEHRLVF VFWASSGCYA 120 LKGGWIKEFV KRRALEVGDE VGIYWDPSER KFHFSLLHMI VLSPQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E02053.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010058716.1	3e-99	PREDICTED: uncharacterized protein LOC104446575
TrEMBL	A0A059C6I2	1e-119	A0A059C6I2_EUCGR; Uncharacterized protein
STRING	XP_010058726.1	1e-114	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM456	9	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	1e-28	B3 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E02053.1.p