PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Eucgr.E02046.1.p | ||||||||
Common Name | EUGRSUZ_E02046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 162aa MW: 18309.1 Da PI: 8.839 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.4 | 1.6e-10 | 51 | 156 | 3 | 96 |
EE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keFvkangLkegDfvvF 82 k lt+sd + ++rl + ++ +++h + ++ ++ +++++d +g + ++ + ++ +sg y l++GW keFvk L++gD v + Eucgr.E02046.1.p 51 KRLTQSDLGHLSRLLIGRDLVKSHflrwmseetvrQVESGKGADVIVRDmDTGSEHRLVFVFWASSGCYALKGGWiKEFVKRRALEVGDEVGI 143 889*************************9988887555568999*****8889999999999*************999*************** PP EE-SS.SEE..EEEE CS B3 83 kldgr.sefelvvkv 96 + ++ se+++++++ Eucgr.E02046.1.p 144 Y--WDpSERKFHFSL 156 9..666777777765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-14 | 49 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.49E-15 | 49 | 155 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-16 | 50 | 157 | No hit | No description |
Pfam | PF02362 | 1.1E-7 | 51 | 155 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MASLTNAESL IAEKKAKCKR TQKGKKEASG CDAEEVSTEL TLVFDPYKVK KRLTQSDLGH 60 LSRLLIGRDL VKSHFLRWMS EETVRQVESG KGADVIVRDM DTGSEHRLVF VFWASSGCYA 120 LKGGWIKEFV KRRALEVGDE VGIYWDPSER KFHFSLLHMV D* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Eucgr.E02046.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058722.2 | 2e-99 | PREDICTED: B3 domain-containing protein At2g33720 | ||||
TrEMBL | A0A059C5M0 | 1e-114 | A0A059C5M0_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058726.1 | 1e-113 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33720.1 | 1e-28 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Eucgr.E02046.1.p |