PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02044.1.p
Common NameEUGRSUZ_E02044
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 285aa    MW: 31796 Da    PI: 7.111
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02044.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.6e-12173279296
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d +   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v 
  Eucgr.E02044.1.p 173 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmseetvrQVESSKGADVIVRDMDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVG 265
                       5889************************98888887444457889999997666778888888*************999***********999 PP

                       EEE-SS.SEE..EEEE CS
                B3  82 Fkldgr.sefelvvkv 96 
                       ++   + s  ++++++
  Eucgr.E02044.1.p 266 IYW--EpSASKFHFSL 279
                       995..44554446665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-15171279IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0043172283IPR003340B3 DNA binding domain
CDDcd100179.53E-19172280No hitNo description
Gene3DG3DSA:2.40.330.101.4E-15173280IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-8174278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEHVDLLAPK TPPISEVPRG DVHSPLSMDS LSSRDSCPQD HEKKKPIGDH LRSKVHSPES  60
MDSSSCLSYL QDQEKNGDEG AAGISSAGVV ASREFFLLVP DQNTKEVGHP RQEIVPAQLK  120
RKSMASLADP ETFIVEKTAK YKRTQRGKEE ASGCDPEEVS TELTLLFDPY KIKKRLTQSD  180
LGHLSRLLIG RDFVKSHFLR WMSEETVRQV ESSKGADVIV RDMDTCSEHR LVFVFWASSG  240
SYVLKGGWIK EFVKRRGLAA GDEVGIYWEP SASKFHFSLL HKAN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02044.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018728844.11e-159PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5A20.0A0A059C5A2_EUCGR; Uncharacterized protein
STRINGXP_010041071.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-29B3 family protein