PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E02029.1.p
Common NameEUGRSUZ_E02029
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 274aa    MW: 30261.9 Da    PI: 9.3828
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E02029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.3e-11162269297
                       EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvv 81 
                       +k+l++sd + ++rl + ++f+++h           +++  ++ +++++d +   + ++ +  + +sg+yvl++GW keFvk  gL +gD v 
  Eucgr.E02029.1.p 162 KKKLKQSDLGHLSRLLIGRDFVTSHllrwmseemvrQIEGGKGADVIVRDVDTcSEHRLVFVLWASSGSYVLKGGWiKEFVKRRGLVAGDEVG 254
                       699**************************9998888444447889*****8887555555555*************999*************9 PP

                       EEE-SS.SEE..EEEEE CS
                B3  82 Fkldgr.sefelvvkvf 97 
                       ++   + s  +++++++
  Eucgr.E02029.1.p 255 IYW--DpSASKFHFSLL 269
                       995..445554577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-14160269IPR015300DNA-binding pseudobarrel domain
CDDcd100174.18E-17161269No hitNo description
SMARTSM010190.0016161272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-14162269IPR015300DNA-binding pseudobarrel domain
PfamPF023622.9E-8163267IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSSCLSIFSP TLSSSLSLSL SEFLCTAMPS VVPPKHFPVS STEKPMELID FLGPASPPIG  60
DVQKSRKEGA GDISPAIVVA AREFFPPAPD QNMKEVRDPL QEIAPTQRKR KSKASLANAE  120
TLIVEKKAKY KRTQKGKKED SGCDTEEVST ELALLFDPYK IKKKLKQSDL GHLSRLLIGR  180
DFVTSHLLRW MSEEMVRQIE GGKGADVIVR DVDTCSEHRL VFVLWASSGS YVLKGGWIKE  240
FVKRRGLVAG DEVGIYWDPS ASKFHFSLLH KAN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106111QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E02029.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058715.21e-167PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5S60.0A0A059C5S6_EUCGR; Uncharacterized protein
STRINGXP_010058715.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.19e-28B3 family protein