PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E02016.1.p | ||||||||
Common Name | EUGRSUZ_E02016, LOC104444673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18645.1 Da PI: 8.5019 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 145.4 | 1.6e-45 | 15 | 114 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++ Eucgr.E02016.1.p 15 PCAACKLLRRRCAQDCVFAPYFPADEPHKFANVHKVFGASNVNKMLQDLPVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLQSQ 107 7******************************************************************************************** PP DUF260 94 lallkee 100 la++++e Eucgr.E02016.1.p 108 LAQARAE 114 **99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.719 | 14 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-45 | 15 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKESGGSRKQ GTPSPCAACK LLRRRCAQDC VFAPYFPADE PHKFANVHKV FGASNVNKML 60 QDLPVHQRGD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDMLQSQLAQ ARAEVVHLRV 120 WQNATMSNHG PSPTSPSNSG SPSSRLMASH GKSIFDMDMM VDQPNLGDSV W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-49 | 11 | 116 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-49 | 11 | 116 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E02016.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056710.1 | 1e-126 | PREDICTED: LOB domain-containing protein 4 | ||||
Swissprot | Q9SHE9 | 4e-73 | LBD4_ARATH; LOB domain-containing protein 4 | ||||
TrEMBL | A0A059C4X8 | 1e-125 | A0A059C4X8_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056710.1 | 1e-126 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 2e-72 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E02016.1.p |
Entrez Gene | 104444673 |