PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01948.1.p | ||||||||
Common Name | EUGRSUZ_E01948 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 188aa MW: 21765.9 Da PI: 10.7561 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33.1 | 1e-10 | 67 | 159 | 2 | 80 |
EEE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHH.HHHHHT--TT-EE CS B3 2 fkvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGWke.FvkangLkegDfv 80 +k+lt+sd +++ +rl+lp+ +e+h + +++ ++++++++ + r+ ++ ++ ++++g+yvl +GW + Fvk+ +L++g + Eucgr.E01948.1.p 67 KKKLTKSDLSAHlSRLMLPRGSVEAHvfrlmdnemkkQVESKDGMKVVVRNADTrREHKLVFRRWGSPGTYVLNGGWHKlFVKERELEVGHEI 159 6899999999999*****************9998776444447899999996555999999999*************766********99654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 1.5E-7 | 62 | 146 | IPR005508 | B3 domain-containing protein |
SMART | SM01019 | 4.8E-6 | 66 | 178 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.65E-14 | 66 | 176 | No hit | No description |
SuperFamily | SSF101936 | 1.49E-15 | 66 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-15 | 67 | 178 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTSRKIAHGR NRREREKGSI EVKRKGSSSS VVPYNNSRPV PRHEEEENIY AGFSTDLVLY 60 EDQCKIKKKL TKSDLSAHLS RLMLPRGSVE AHVFRLMDNE MKKQVESKDG MKVVVRNADT 120 RREHKLVFRR WGSPGTYVLN GGWHKLFVKE RELEVGHEIG MFWDKYERKF FITVHRRVAR 180 GPSNAAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01948.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058662.1 | 1e-121 | PREDICTED: putative B3 domain-containing protein At1g78640 | ||||
TrEMBL | A0A059C550 | 1e-135 | A0A059C550_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058662.1 | 1e-120 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM456 | 9 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33720.1 | 1e-21 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01948.1.p |