PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01934.1.p
Common NameEUGRSUZ_E01934, EUGRSUZ_E01939
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 212aa    MW: 23284.4 Da    PI: 8.2163
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01934.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.6e-13105208294
                       EEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHH.HHHHHT--TT-EEEE CS
                B3   2 fkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltled.esgrsWevkliyrkksgryvltkGWke.FvkangLkegDfvvF 82 
                        k+lt+sdv  s+rl lp ++++++          + +++e++ + + d ++g+++++ ++ +++s++yvl +GW + Fvk +gLk+gD v  
  Eucgr.E01934.1.p 105 TKKLTKSDVDHSARLLLPLDCLKAIlrdmddemrrQVESTEGMGVGVVDlKTGNEYQLVFRRWGSSRSYVLNSGWTKlFVKRQGLKVGDEVGM 197
                       699************************99998888666668899999998889**********************876***********8876 PP

                       EE-SSSEE..EE CS
                B3  83 kldgrsefelvv 94 
                         d+  ++++++
  Eucgr.E01934.1.p 198 CWDK-GSRKFYF 208
                       6443.4444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0016104210IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-15104210IPR015300DNA-binding pseudobarrel domain
CDDcd100177.22E-18104211No hitNo description
Gene3DG3DSA:2.40.330.103.5E-16105206IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-10105209IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MTGSSPAPAP LIDFLGSPGN FSSSPIQNAD IVTRPPNPHS VPTQTGAMTG SSSDPPPLID  60
FLGSPRNFPS SPIQNADIVT HQEERNRSSD VSTELTLRLY PGEITKKLTK SDVDHSARLL  120
LPLDCLKAIL RDMDDEMRRQ VESTEGMGVG VVDLKTGNEY QLVFRRWGSS RSYVLNSGWT  180
KLFVKRQGLK VGDEVGMCWD KGSRKFYFKV L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01934.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058760.11e-100PREDICTED: B3 domain-containing protein At2g33720-like
TrEMBLA0A059C5471e-154A0A059C547_EUCGR; Uncharacterized protein
STRINGXP_010058755.11e-131(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.16e-21B3 family protein