PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01593.1.p | ||||||||
Common Name | EUGRSUZ_E01593, LOC104444443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 290aa MW: 30232.8 Da PI: 4.9026 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.7 | 2.8e-18 | 113 | 162 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++++g Eucgr.E01593.1.p 113 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 162 69****998.**********843...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-12 | 113 | 162 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.604 | 113 | 170 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-39 | 113 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 113 | 171 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-32 | 113 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.12E-33 | 114 | 172 | No hit | No description |
PRINTS | PR00367 | 2.5E-10 | 114 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-10 | 136 | 152 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MAQHINIESG AQETSPSSSS LTTTTTTTTA PAAAAATTSS SSYSSAVAVA ATTTTTSSSS 60 TSSTGSDPAL EPSKRSEDCT SQKGPGKSPS PGAHPEEPAG KRHKAGGSGE HPTYRGVRMR 120 NWGKWVSEIR EPRKKSRIWL GTYPTAEMAA RAHDVAALAI KGSSAVLNFP ELAPELPRPA 180 STSPKDIQEA AAKAAASFAP LPSERGAEDD GTGANPRRDT SERSLSDTNS SQESTNCSSN 240 DNEDALFDLP DLCVDQPNGF GFCPSLSWQV CAADSGSRLE EPYLAWDYF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 106 | 170 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00312 | DAP | Transfer from AT2G44940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01593.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056415.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF034 | ||||
Swissprot | Q8LBQ7 | 2e-60 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A059C3U9 | 0.0 | A0A059C3U9_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056415.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 4e-58 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01593.1.p |
Entrez Gene | 104444443 |
Publications ? help Back to Top | |||
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