PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01554.1.p | ||||||||
Common Name | EUGRSUZ_E01554, LOC104446340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | ERF | ||||||||
Protein Properties | Length: 183aa MW: 20285.5 Da PI: 4.787 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.7 | 2.9e-13 | 117 | 161 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt.aeeAakaai 47 + y+GVr+ + +g+++AeIrdp++ng +r +lg++ t eeAa a++ Eucgr.E01554.1.p 117 CVYRGVRRWP-SGKYAAEIRDPKKNG--ARRWLGTYKTpQEEAALAYD 161 68****9999.7**********9998..**********7789999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.3E-8 | 117 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.4E-13 | 118 | 182 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 118 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-13 | 118 | 169 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.893 | 118 | 179 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-17 | 119 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MCTASSTISE SDVALLECIR QHLLNDDDFE TLAKIAENVQ FHLPVSSSNT FPSLETTMSF 60 EANDGDVDIH HDPLKDAVGF ESASLLNQQP VVDRGHVEAN EAMPAVVHEY DARPGGCVYR 120 GVRRWPSGKY AAEIRDPKKN GARRWLGTYK TPQEEAALAY DRPVRDAWDQ GQAKFPSLDR 180 LQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-14 | 116 | 162 | 3 | 48 | ATERF1 |
3gcc_A | 7e-14 | 116 | 162 | 3 | 48 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01554.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010058504.1 | 1e-136 | PREDICTED: pathogenesis-related genes transcriptional activator PTI5 | ||||
TrEMBL | A0A059C4E3 | 1e-134 | A0A059C4E3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010058504.1 | 1e-135 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 6e-19 | ethylene-responsive element binding factor 13 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01554.1.p |
Entrez Gene | 104446340 |