PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Eucgr.E01510.1.p
Common NameEUGRSUZ_E01510, LOC104444412
Organism
Eucalyptus grandis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 715aa    MW: 78746.7 Da    PI: 6.6684
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Eucgr.E01510.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.99.6e-1013567132374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                        e+L++++e +++g+  laq +Larl+++ sp g+p++R+a+y++eAL+  l+   +++    +p + s+ + + ++ a+k fse+sP+l+f+
  Eucgr.E01510.1.p 356 AEQLFKAVELIETGNSVLAQGILARLNHQLSPIGKPFHRAAFYVKEALQLLLHA--NSTN---HPPAFSPFSLIYKIGAFKSFSEISPVLQFA 443
                       579**************************************************9..4444...555555556********************* PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                       ++t+Nqa lea+eg ervHii fdi++G+QW++L+q+La R++g+psl+iT+++sp+++++ el  t+e+L++fA+e++v +ef+v+  ++l+
  Eucgr.E01510.1.p 444 NFTCNQAFLEALEGFERVHIISFDIGYGGQWASLMQELALRNGGAPSLKITAFASPTTHDEVELTLTQENLKHFANEINVALEFEVINIEALS 536
                       **************************************************************************************9777776 PP

              GRAS 188 dleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       +  ++ L  +v  gEa+aVnl +  ++ +      +s  +  L++vk+lsPk+v   ++ +d+++ +F +++++al+++s+l++sl+a  + +
  Eucgr.E01510.1.p 537 ST-PWPLplNVPDGEAIAVNLPIGSFSAH------PSFLPLALRFVKQLSPKIVMSLDRSCDRTDVPFPQQVVHALDCHSSLLESLDAV-HVN 621
                       65.6766226666**********888887......4555679********************************************887.567 PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                        e  +k+E+ +l++ i+++++ +++      e+   Wr+ + ++GF+p+++s+++++qa++ll++++++g++ve++++slvl+W++++Lvs+S
  Eucgr.E01510.1.p 622 LEVLQKIEKYFLQPGIEKIIMGRHRT----PERTVPWRSLFLSSGFSPLTFSNFNESQAEYLLQRTAVRGFHVEKRQHSLVLCWQRKELVSAS 710
                       799******************99998....89999********************************************************** PP

              GRAS 372 aWr 374
                       aWr
  Eucgr.E01510.1.p 711 AWR 713
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.202329693IPR005202Transcription factor GRAS
PfamPF035143.3E-98356713IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MKATPLPFEE LQRKGVVLDF SASSDSSPQH HHHHHHHRQH HHRHHSLQQQ EQQLQQQKWS  60
SGETPRSKLG NFYVGSEKSS FLEIRRSPSP QPSSTLSSSL NSGGGGGGAS TDTTGCAAAA  120
GAAASGNNTP QGALAKCGMG VEDWEGVLPE NSQEQSILRM IMGDIEDPSM GLSKLLQGTG  180
GSQELEFSAG FGVLDPGFGF EPVTSTNLNI ETSLHDSGSD FALGAQNLHG NNQHHNESLD  240
EKPMIFNPQA IINHNQAQFP SNPSFFLPPG HAQMQDHHLL LPPPPKRLNP GSIEPNYSGP  300
GTGLLDSGQD LFARRQQHQQ LQLHPQQFQQ RPVAAVMKQK MVNEDIVTQQ LQQAIAEQLF  360
KAVELIETGN SVLAQGILAR LNHQLSPIGK PFHRAAFYVK EALQLLLHAN STNHPPAFSP  420
FSLIYKIGAF KSFSEISPVL QFANFTCNQA FLEALEGFER VHIISFDIGY GGQWASLMQE  480
LALRNGGAPS LKITAFASPT THDEVELTLT QENLKHFANE INVALEFEVI NIEALSSTPW  540
PLPLNVPDGE AIAVNLPIGS FSAHPSFLPL ALRFVKQLSP KIVMSLDRSC DRTDVPFPQQ  600
VVHALDCHSS LLESLDAVHV NLEVLQKIEK YFLQPGIEKI IMGRHRTPER TVPWRSLFLS  660
SGFSPLTFSN FNESQAEYLL QRTAVRGFHV EKRQHSLVLC WQRKELVSAS AWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-3037371321375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapEucgr.E01510.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056373.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A059C4A30.0A0A059C4A3_EUCGR; Uncharacterized protein
STRINGXP_010056373.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-148GRAS family protein