PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Eucgr.E01478.1.p

Common Name

EUGRSUZ_E01478

Organism

Eucalyptus grandis

Taxonomic ID

71139

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 338aa MW: 38034.4 Da PI: 7.3271

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Eucgr.E01478.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	47.2	4e-15	18	98	1	87
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k +ps+v++ ++ lpk+f++ h +k e+ t+ ledesg ++e k+ + k++ l++GW++F a+ + eg vvF+l+ Eucgr.E01478.1.p 18 FVKRKLPSHVTRVFWMGLPKQFCDPHLLK--EDATIELEDESGDVYETKYLWAKTG----LSGGWRGFSIAHSIMEGNAVVFQLVMP 98 889999******************888..5679***********999998....*********************8754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.7E-15	9	102	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.86E-18	11	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.99E-18	16	102	No hit	No description
PROSITE profile	PS50863	10.616	18	114	IPR003340	B3 DNA binding domain
SMART	SM01019	1.3E-11	18	107	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-12	18	100	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MERAKAVQSS LSPQFPSFVK RKLPSHVTRV FWMGLPKQFC DPHLLKEDAT IELEDESGDV 60 YETKYLWAKT GLSGGWRGFS IAHSIMEGNA VVFQLVMPTQ FKGFRLQMIL YSDTSLFMTE 120 LAPDNIREDG LKIRSTHYRS VADHPKTNSD DRVSNGLHGI QFSESVIDFG GVPSIEDFSI 180 ITKGLVIDSE LSKHLRGKFY ELCRSRKTFL HARLLEGLHC KLAAGIISET VNIADAIRGA 240 RITTSTEDFS VWATTLKAFE DLGMDVGFLR ARLGRLISLS LALKRCKEPK SARARAAEER 300 SRFEAELTEE PGLERDGLDI EDAWRRTAHE TSYSWKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Eucgr.E01478.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010058476.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100
TrEMBL	A0A059C4D8	0.0	A0A059C4D8_EUCGR; Uncharacterized protein
STRING	XP_010058476.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	3e-30	B3 family protein

Link Out ? help Back to Top
Phytozome	Eucgr.E01478.1.p