PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01474.1.p | ||||||||
Common Name | EUGRSUZ_E01474 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | YABBY | ||||||||
Protein Properties | Length: 291aa MW: 32378.2 Da PI: 8.7543 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 238.1 | 2e-73 | 89 | 253 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes..hldeslkee..lleelkveeenlksnvekeesas 93 s eq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ a + hl++s+ + llee ++ +n+ +n++ ++++ Eucgr.E01474.1.p 89 SPNEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRSLLLPPAPANqlHLGHSYFTPqnLLEEIRNVPSNMLMNQTIPNEPM 181 6789***************************************99998875544444015555543322355555555555555555555444 PP YABBY 94 tsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + e++p++pp v+rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl Eucgr.E01474.1.p 182 MQLR------GGIEDIPKPPPvVNRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 253 4443......46799***99989*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.7E-72 | 90 | 253 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 4.32E-8 | 192 | 247 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.3E-4 | 202 | 245 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MPIFISLPPS LPPSLPPSLS LSLFPHLFSS TIKSERECSD PKQLSCLSYI NPTSLSHFTS 60 RTDRSILSTI KSKRNNMSSS SAFSPDPLSP NEQLCYVHCN FCDTVLAVSV PCSSLFKTVT 120 VRCGHCTNLL SVNMRSLLLP PAPANQLHLG HSYFTPQNLL EEIRNVPSNM LMNQTIPNEP 180 MMQLRGGIED IPKPPPVVNR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA 240 KNWAHFPHIH FGLMPDHQPV KKANLRQQEG EDVLMKDGFF TPTNVGVSPY * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01474.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056343.2 | 0.0 | PREDICTED: axial regulator YABBY 1 | ||||
Swissprot | O22152 | 5e-95 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A059C530 | 0.0 | A0A059C530_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056343.1 | 1e-158 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2217 | 28 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 7e-83 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01474.1.p |