PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01415.1.p | ||||||||
Common Name | EUGRSUZ_E01415, LOC104444343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25414.6 Da PI: 8.379 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129 | 2.1e-40 | 31 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+apyf a+q p++fa+vh++FGasn +kll+++p ++r da+ +l+yeA arardPvyG+vg+i++lqqq+ +l+a Eucgr.E01415.1.p 31 PCGACKFLRRKCVRGCVFAPYFDADQgPAHFAAVHRVFGASNASKLLARVPAHRRLDAVVTLCYEALARARDPVYGCVGHIFALQQQVVNLQA 123 7************************999***************************************************************** PP DUF260 93 elallkee 100 ela+++++ Eucgr.E01415.1.p 124 ELAYVQAR 131 ****9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.291 | 30 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.3E-39 | 31 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MSNKNDNNTA SNSDPNGSSS SSTASGGGGG PCGACKFLRR KCVRGCVFAP YFDADQGPAH 60 FAAVHRVFGA SNASKLLARV PAHRRLDAVV TLCYEALARA RDPVYGCVGH IFALQQQVVN 120 LQAELAYVQA RLASLQHFPL QPLPPQSPPQ SELQSSSDTA LLSEVVPNPT LPNMYFNSYQ 180 LQNGALAGLP NFRMNLAEER EIEDAQLHSL ARVFISSSRH LPPPGVRFDG SSPGKNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-37 | 27 | 125 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-37 | 27 | 125 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01415.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056298.1 | 1e-173 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 1e-63 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A059C418 | 1e-172 | A0A059C418_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056298.1 | 1e-173 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-55 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01415.1.p |
Entrez Gene | 104444343 |