PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01414.1.p | ||||||||
Common Name | EUGRSUZ_E01414, LOC104444342 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 24872.2 Da PI: 7.7391 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.7 | 1.2e-40 | 33 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+a Eucgr.E01414.1.p 33 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHRRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQA 125 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 el++l+++ Eucgr.E01414.1.p 126 ELSYLQAH 133 ***99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.999 | 32 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.8E-40 | 33 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSSNPSSSGG GGGGGGGSGS GGGSGSGSGS GGPCGACKFL RRKCVPGCIF APYFDSEQGA 60 AHFAAVHKVF GASNVSKLLL HIPVHRRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQV 120 VNLQAELSYL QAHLTTLELP VPLPPPPPPP AMGPQLSIAD LPSASSIPAT YDLSSLFDPM 180 AQAAWMVPQR QIDFRQFEGS CGGGGSSAAG GGDLNALARE LLRRQGSPPP GCIDAMSSPS 240 SLSK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-39 | 29 | 134 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-39 | 29 | 134 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 7 | 17 | SGGGGGGGGGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00314 | DAP | Transfer from AT2G45420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01414.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC118672 | 4e-82 | AC118672.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0078P24, from chromosome 3, complete sequence. | |||
GenBank | AC226706 | 4e-82 | AC226706.2 Oryza minuta clone OM__Ba0084M12, complete sequence. | |||
GenBank | AP014959 | 4e-82 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 4e-82 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056297.1 | 1e-175 | PREDICTED: LOB domain-containing protein 18 | ||||
Swissprot | O22131 | 1e-83 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A059C3F2 | 1e-173 | A0A059C3F2_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056297.1 | 1e-174 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-81 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01414.1.p |
Entrez Gene | 104444342 |
Publications ? help Back to Top | |||
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