PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01093.1.p | ||||||||
Common Name | EUGRSUZ_E01093, LOC104444140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | B3 | ||||||||
Protein Properties | Length: 337aa MW: 37267.8 Da PI: 8.2166 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 99.8 | 1.6e-31 | 33 | 137 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr. 87 f+kv tpsdv+k++rlv+pk++ae++ ++ + ++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ Eucgr.E01093.1.p 33 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTSDKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGaGEs 125 89**************************99555568889************************************************775777 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 + +l++ ++r+ Eucgr.E01093.1.p 126 GKDRLYIDWRRR 137 888899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-42 | 27 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.89E-30 | 30 | 135 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.65E-26 | 31 | 120 | No hit | No description |
SMART | SM01019 | 3.5E-23 | 33 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-29 | 33 | 137 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.677 | 33 | 138 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MIREFMDLSP RNDGYITQES YTPCAEIEKE HMFDKVVTPS DVGKLNRLVI PKQHAEKYFP 60 LDSSTSDKGL LLNFEDRNGK PWRFRYSYWN SSQSYVMTKG WSRFVKEKKL DAGDIVSFQR 120 GAGESGKDRL YIDWRRRPNP PEHTSVFPNL PLPHHQLSFH RSVPWGLSSL VGSAVTSSTT 180 FLGNPYQSYG STSNHPYGHG DIINSSNYGG SSVFLLRSSV APRQLGIMEN MEVQGGGGGG 240 GGLLGARRGV EPVVFDSVPV VHGNKAAAKK FRLFGVNMEC PDSESSEPST SSLQPPQISA 300 TTSQYPSHEL RVYDGWPLLN VPSKDKASSM SLDLEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 6e-65 | 28 | 138 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 6e-65 | 28 | 138 | 3 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01093.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056052.1 | 0.0 | PREDICTED: B3 domain-containing protein Os03g0120900 | ||||
Swissprot | Q6EU30 | 2e-71 | Y2835_ORYSJ; B3 domain-containing protein Os02g0683500 | ||||
TrEMBL | A0A059C2E3 | 0.0 | A0A059C2E3_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056052.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 9e-68 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01093.1.p |
Entrez Gene | 104444140 |
Publications ? help Back to Top | |||
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