PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Eucgr.E01053.1.p | ||||||||
Common Name | EUGRSUZ_E01053, LOC104444108 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
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Family | NAC | ||||||||
Protein Properties | Length: 400aa MW: 44968.5 Da PI: 7.2317 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.9 | 5.8e-51 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 +ppGfrFhPt+eel+++yL+kkv+ +k++l +vi+evd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk Eucgr.E01053.1.p 11 VPPGFRFHPTEEELLHYYLRKKVAYEKIDL-DVIREVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDK 102 69****************************.9***************964443122456********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s + + +gl+ktLvfykgrap+g+k+dW+mheyrl Eucgr.E01053.1.p 103 IIYS-GFKRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 139 ****.9999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-57 | 7 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.344 | 11 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.9E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 400 aa Download sequence Send to blast |
MNLSINGQSQ VPPGFRFHPT EEELLHYYLR KKVAYEKIDL DVIREVDLNK LEPWDIQEKC 60 RIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKIIYSGFKR IGLRKTLVFY 120 KGRAPHGQKS DWIMHEYRLD ESTHDPNALS PAGDASPEEG WVVCRVFKKK NYQKTLDSPK 180 SPSSSTSMDS KAMQQMLAAT ANDGVLDQIL SYMGRTCKVE SETPTKLNLS HNNYNHNNNI 240 KYPVSNTDLL HGKFMHLPRL ESPILPLIPV ASPPFDHQDC SFKLSYHSLD EMLAETSGHQ 300 GIGRSPTPDW VAMDRLVASQ LNGQVAETPK QLSSCFSDDP GSDVGGLSMD DEVQFSHTKL 360 SNKPSGQQSL EMYGCESNDL WSFTKTSTSS SDPLRHLSV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 8 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 8 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 8 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 8 | 171 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 8 | 171 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 8 | 171 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 8 | 171 | 14 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Eucgr.E01053.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010056017.1 | 0.0 | PREDICTED: NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 1e-116 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A059C297 | 0.0 | A0A059C297_EUCGR; Uncharacterized protein | ||||
STRING | XP_010056017.1 | 0.0 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-103 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Eucgr.E01053.1.p |
Entrez Gene | 104444108 |